SUPERFAMILY 1.75 HMM library and genome assignments server

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Phosphotyrosine protein phosphatases I superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 7 SUPERFAMILY models representing the Phosphotyrosine protein phosphatases I superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0048765 1606 2008-09-10 d1phra_ Low-molecular-weight phosphotyrosine protein phosphatases
0046251 1283 2008-09-10 d1d1qa_ Low-molecular-weight phosphotyrosine protein phosphatases
0053360 1593 2008-09-10 d5pnta_ Low-molecular-weight phosphotyrosine protein phosphatases
0047618 1673 2008-09-10 d1jl3a_ Low-molecular-weight phosphotyrosine protein phosphatases
0042188 448 2005-09-08 d1p8aa_ Low-molecular-weight phosphotyrosine protein phosphatases
0051181 1638 2008-09-10 d1y1la_ Low-molecular-weight phosphotyrosine protein phosphatases
0047572 1357 2008-09-10 d1jf8a_ Low-molecular-weight phosphotyrosine protein phosphatases