SUPERFAMILY 1.75 HMM library and genome assignments server

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(Phosphotyrosine protein) phosphatases II superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 27 SUPERFAMILY models representing the (Phosphotyrosine protein) phosphatases II superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0038934 713 2005-09-08 d1i9sa_ Dual specificity phosphatase-like
0048179 2914 2008-09-10 d1mkpa_ Dual specificity phosphatase-like
0041856 1572 2005-09-08 d1ohea2 Dual specificity phosphatase-like
0046846 1741 2008-09-10 d1fpza_ Dual specificity phosphatase-like
0051082 2474 2008-09-10 d1xria_ Dual specificity phosphatase-like
0036282 1171 2005-09-08 d1d5ra2 Dual specificity phosphatase-like
0049260 1636 2008-09-10 d1rxda_ Dual specificity phosphatase-like
0043147 1029 2005-09-08 d1r6ha_ Dual specificity phosphatase-like
0048076 2571 2008-09-10 d1m3ga_ Dual specificity phosphatase-like
0044763 1205 2005-09-08 d1vhra_ Dual specificity phosphatase-like
0048567 358 2008-09-10 d1ohea1 Dual specificity phosphatase-like
0040439 1596 2005-09-08 d1lara2 Higher-molecular-weight phosphotyrosine protein phosphatases
0045450 1566 2005-09-08 d2shpa1 Higher-molecular-weight phosphotyrosine protein phosphatases
0043336 1446 2005-09-08 d1rpma_ Higher-molecular-weight phosphotyrosine protein phosphatases
0040438 1242 2005-09-08 d1lara1 Higher-molecular-weight phosphotyrosine protein phosphatases
0045098 1093 2005-09-08 d1ypta_ Higher-molecular-weight phosphotyrosine protein phosphatases
0037934 1030 2005-09-08 d1g4us2 Higher-molecular-weight phosphotyrosine protein phosphatases
0046845 3784 2008-09-10 d1fpra_ Higher-molecular-weight phosphotyrosine protein phosphatases
0050432 4236 2008-09-10 d1wcha_ Higher-molecular-weight phosphotyrosine protein phosphatases
0039614 1501 2005-09-08 d1jlna_ Higher-molecular-weight phosphotyrosine protein phosphatases
0042113 1582 2005-09-08 d1p15a_ Higher-molecular-weight phosphotyrosine protein phosphatases
0047943 1719 2008-09-10 d1l8ka_ Higher-molecular-weight phosphotyrosine protein phosphatases
0051299 4188 2008-09-10 d1yfoa_ Higher-molecular-weight phosphotyrosine protein phosphatases
0036941 1076 2005-09-08 d1eeoa_ Higher-molecular-weight phosphotyrosine protein phosphatases
0040695 198 2005-09-08 d1lw3a2 Myotubularin-like phosphatases
0049772 2175 2008-09-10 d1u24a_ Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA
0051429 1526 2008-09-10 d1ywfa1 Mycobacterial PtpB-like