SUPERFAMILY 1.75 HMM library and genome assignments server

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Rhodanese/Cell cycle control phosphatase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 22 SUPERFAMILY models representing the Rhodanese/Cell cycle control phosphatase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0042691 903 2005-09-08 d1qb0a_ Cell cycle control phosphatase, catalytic domain
0038810 669 2005-09-08 d1hzma_ Cell cycle control phosphatase, catalytic domain
0046064 1676 2008-09-10 d1c25a_ Cell cycle control phosphatase, catalytic domain
0043853 907 2005-09-08 d1t3ka_ Cell cycle control phosphatase, catalytic domain
0049979 4608 2008-09-10 d1urha1 Multidomain sulfurtransferase (rhodanese)
0049168 3491 2008-09-10 d1rhsa1 Multidomain sulfurtransferase (rhodanese)
0051400 3439 2008-09-10 d1yt8a3 Multidomain sulfurtransferase (rhodanese)
0049841 3830 2008-09-10 d1uara2 Multidomain sulfurtransferase (rhodanese)
0041897 599 2005-09-08 d1okga2 Multidomain sulfurtransferase (rhodanese)
0046433 3790 2008-09-10 d1e0ca2 Multidomain sulfurtransferase (rhodanese)
0051399 4846 2008-09-10 d1yt8a2 Multidomain sulfurtransferase (rhodanese)
0044241 856 2005-09-08 d1uara1 Multidomain sulfurtransferase (rhodanese)
0049980 3530 2008-09-10 d1urha2 Multidomain sulfurtransferase (rhodanese)
0049169 4721 2008-09-10 d1rhsa2 Multidomain sulfurtransferase (rhodanese)
0051401 3999 2008-09-10 d1yt8a4 Multidomain sulfurtransferase (rhodanese)
0041896 560 2005-09-08 d1okga1 Multidomain sulfurtransferase (rhodanese)
0046432 3853 2008-09-10 d1e0ca1 Multidomain sulfurtransferase (rhodanese)
0051398 3062 2008-09-10 d1yt8a1 Multidomain sulfurtransferase (rhodanese)
0044085 1556 2005-09-08 d1tq1a_ Single-domain sulfurtransferase
0038171 1448 2005-09-08 d1gmxa_ Single-domain sulfurtransferase
0043033 1572 2005-09-08 d1qxna_ Single-domain sulfurtransferase
0050551 417 2008-09-10 d1whba_ Ubiquitin carboxyl-terminal hydrolase 8, USP8