SUPERFAMILY 1.75 HMM library and genome assignments server

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Thioredoxin-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 171 SUPERFAMILY models representing the Thioredoxin-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046295 7186 2008-09-10 d1dbya_ Thioltransferase
0037704 2258 2005-09-08 d1fo5a_ Thioltransferase
0041456 1195 2005-09-08 d1nm3a1 Thioltransferase
0045754 1246 2008-09-10 d1abaa_ Thioltransferase
0049633 7252 2008-09-10 d1ti3a_ Thioltransferase
0051504 5651 2008-09-10 d1z6na1 Thioltransferase
0046603 5661 2008-09-10 d1ep7a_ Thioltransferase
0048529 4742 2008-09-10 d1oaza_ Thioltransferase
0049496 5489 2008-09-10 d1syra_ Thioltransferase
0045879 2389 2008-09-10 d1b4qa_ Thioltransferase
0046982 7091 2008-09-10 d1gh2a_ Thioltransferase
0048363 5497 2008-09-10 d1nhoa_ Thioltransferase
0050617 1422 2008-09-10 d1wjka_ Thioltransferase
0051595 1492 2008-09-10 d1zmaa1 Thioltransferase
0037474 2535 2005-09-08 d1fb6a_ Thioltransferase
0040838 2493 2005-09-08 d1m7ta_ Thioltransferase
0046733 5622 2008-09-10 d1f9ma_ Thioltransferase
0049089 5668 2008-09-10 d1r26a_ Thioltransferase
0049632 7235 2008-09-10 d1thxa_ Thioltransferase
0050950 5689 2008-09-10 d1xfla_ Thioltransferase
0039073 208 2005-09-08 d1iloa_ Thioltransferase
0047046 1957 2008-09-10 d1grxa_ Thioltransferase
0049377 5717 2008-09-10 d1sena_ Thioltransferase
0049857 7723 2008-09-10 d1uc7a_ Thioltransferase
0051129 5631 2008-09-10 d1xwaa_ Thioltransferase
0038457 701 2005-09-08 d1h75a_ Thioltransferase
0046836 4145 2008-09-10 d1fova_ Thioltransferase
0049125 2232 2008-09-10 d1r7ha_ Thioltransferase
0050590 1301 2008-09-10 d1wika_ Thioltransferase
0053106 9375 2008-09-10 d2ifqa1 Thioltransferase
0040257 1159 2005-09-08 d1ktea_ Thioltransferase
0044115 363 2005-09-08 d1ttza_ Thioltransferase
0049048 7244 2008-09-10 d1quwa_ Thioltransferase
0038800 505 2005-09-08 d1hyua4 PDI-like
0051912 21 2008-09-10 d2b5ea2 PDI-like
0035590 528 2005-09-08 d1bjxa_ PDI-like
0048146 5706 2008-09-10 d1meka_ PDI-like
0039300 1551 2005-09-08 d1j08a1 PDI-like
0045740 2447 2008-09-10 d1a8la2 PDI-like
0051914 5742 2008-09-10 d2b5ea4 PDI-like
0052452 1186 2008-09-10 d2djka1 PDI-like
0038799 67 2005-09-08 d1hyua3 PDI-like
0051911 5458 2008-09-10 d2b5ea1 PDI-like
0045739 5386 2008-09-10 d1a8la1 PDI-like
0051913 364 2008-09-10 d2b5ea3 PDI-like
0052451 4573 2008-09-10 d2djja1 PDI-like
0039301 1615 2005-09-08 d1j08a2 PDI-like
0034961 21 2005-09-08 d1a8ya3 Calsequestrin
0045744 309 2008-09-10 d1a8ya2 Calsequestrin
0045743 968 2008-09-10 d1a8ya1 Calsequestrin
0037807 1913 2005-09-08 d1fw1a2 Glutathione S-transferase (GST), N-terminal domain
0039618 1546 2005-09-08 d1jlwa2 Glutathione S-transferase (GST), N-terminal domain
0047011 2684 2008-09-10 d1glqa2 Glutathione S-transferase (GST), N-terminal domain
0047472 4639 2008-09-10 d1iyha2 Glutathione S-transferase (GST), N-terminal domain
0048366 1290 2008-09-10 d1nhya2 Glutathione S-transferase (GST), N-terminal domain
0049720 4524 2008-09-10 d1tw9a2 Glutathione S-transferase (GST), N-terminal domain
0053320 1480 2008-09-10 d3fyga2 Glutathione S-transferase (GST), N-terminal domain
0038306 1410 2005-09-08 d1gwca2 Glutathione S-transferase (GST), N-terminal domain
0046783 1363 2008-09-10 d1fhea2 Glutathione S-transferase (GST), N-terminal domain
0047062 2567 2008-09-10 d1gula2 Glutathione S-transferase (GST), N-terminal domain
0048740 4105 2008-09-10 d1pd212 Glutathione S-transferase (GST), N-terminal domain
0035251 1667 2005-09-08 d1axda2 Glutathione S-transferase (GST), N-terminal domain
0037350 1633 2005-09-08 d1f2ea2 Glutathione S-transferase (GST), N-terminal domain
0037972 1053 2005-09-08 d1g7oa2 Glutathione S-transferase (GST), N-terminal domain
0042387 1819 2005-09-08 d1pmta2 Glutathione S-transferase (GST), N-terminal domain
0047048 2720 2008-09-10 d1gsea2 Glutathione S-transferase (GST), N-terminal domain
0047981 3155 2008-09-10 d1ljra2 Glutathione S-transferase (GST), N-terminal domain
0034808 1475 2005-09-08 d1a0fa2 Glutathione S-transferase (GST), N-terminal domain
0036792 2096 2005-09-08 d1e6ba2 Glutathione S-transferase (GST), N-terminal domain
0039616 1748 2005-09-08 d1jlva2 Glutathione S-transferase (GST), N-terminal domain
0041805 850 2005-09-08 d1oe8a2 Glutathione S-transferase (GST), N-terminal domain
0043130 1358 2005-09-08 d1r5aa2 Glutathione S-transferase (GST), N-terminal domain
0045523 584 2005-09-08 d3gtub2 Glutathione S-transferase (GST), N-terminal domain
0049697 3007 2008-09-10 d1tu7a2 Glutathione S-transferase (GST), N-terminal domain
0052730 731 2008-09-10 d2fnoa2 Glutathione S-transferase (GST), N-terminal domain
0047056 1199 2008-09-10 d1gtua2 Glutathione S-transferase (GST), N-terminal domain
0048057 1427 2008-09-10 d1m0ua2 Glutathione S-transferase (GST), N-terminal domain
0048664 3323 2008-09-10 d1oyja2 Glutathione S-transferase (GST), N-terminal domain
0035238 2060 2005-09-08 d1aw9a2 Glutathione S-transferase (GST), N-terminal domain
0036940 1441 2005-09-08 d1eema2 Glutathione S-transferase (GST), N-terminal domain
0039826 1268 2005-09-08 d1k0dd2 Glutathione S-transferase (GST), N-terminal domain
0047714 1052 2008-09-10 d1k0ma2 Glutathione S-transferase (GST), N-terminal domain
0036606 865 2005-09-08 d1duga2 Glutathione S-transferase (GST), N-terminal domain
0045302 581 2005-09-08 d2gsqa2 Glutathione S-transferase (GST), N-terminal domain
0045810 851 2008-09-10 d1aqwa2 Glutathione S-transferase (GST), N-terminal domain
0051532 2704 2008-09-10 d1z9ha2 Glutathione S-transferase (GST), N-terminal domain
0052112 2422 2008-09-10 d2c4ja2 Glutathione S-transferase (GST), N-terminal domain
0052692 2670 2008-09-10 d2fhea2 Glutathione S-transferase (GST), N-terminal domain
0035346 1204 2005-09-08 d1b48a2 Glutathione S-transferase (GST), N-terminal domain
0038178 1862 2005-09-08 d1gnwa2 Glutathione S-transferase (GST), N-terminal domain
0042395 1672 2005-09-08 d1pn9a2 Glutathione S-transferase (GST), N-terminal domain
0046694 2995 2008-09-10 d1f3ba2 Glutathione S-transferase (GST), N-terminal domain
0047050 3072 2008-09-10 d1gsua2 Glutathione S-transferase (GST), N-terminal domain
0048594 1381 2008-09-10 d1okta2 Glutathione S-transferase (GST), N-terminal domain
0050033 3017 2008-09-10 d1v2aa2 Glutathione S-transferase (GST), N-terminal domain
0052945 2524 2008-09-10 d2gsra2 Glutathione S-transferase (GST), N-terminal domain
0045690 1049 2008-09-10 d1a0rp_ Phosducin
0053311 6167 2008-09-10 d2trcp_ Phosducin
0037970 543 2005-09-08 d1g7ea_ ERP29 N domain-like
0042047 222 2005-09-08 d1ovna2 ERP29 N domain-like
0042775 968 2005-09-08 d1qgva_ spliceosomal protein U5-15Kd
0036937 838 2005-09-08 d1eeja1 DsbC/DsbG C-terminal domain-like
0044619 636 2005-09-08 d1v58a1 DsbC/DsbG C-terminal domain-like
0043845 439 2005-09-08 d1t3ba1 DsbC/DsbG C-terminal domain-like
0041935 1083 2005-09-08 d1on4a_ Glutathione peroxidase-like
0048908 5003 2008-09-10 d1q98a_ Glutathione peroxidase-like
0051125 4836 2008-09-10 d1xvwa1 Glutathione peroxidase-like
0051602 4880 2008-09-10 d1zofa1 Glutathione peroxidase-like
0052340 4778 2008-09-10 d2cx4a1 Glutathione peroxidase-like
0042825 2057 2005-09-08 d1qk8a_ Glutathione peroxidase-like
0050456 4131 2008-09-10 d1we0a1 Glutathione peroxidase-like
0051703 5080 2008-09-10 d2a4va1 Glutathione peroxidase-like
0052012 4404 2008-09-10 d2bmxa1 Glutathione peroxidase-like
0040163 1860 2005-09-08 d1knga_ Glutathione peroxidase-like
0049009 4291 2008-09-10 d1qq2a_ Glutathione peroxidase-like
0050002 4024 2008-09-10 d1uula_ Glutathione peroxidase-like
0050770 4282 2008-09-10 d1x0ra1 Glutathione peroxidase-like
0051671 7314 2008-09-10 d1zzoa1 Glutathione peroxidase-like
0052893 4477 2008-09-10 d2ggta1 Glutathione peroxidase-like
0047310 8892 2008-09-10 d1i5ga_ Glutathione peroxidase-like
0048812 5124 2008-09-10 d1psqa_ Glutathione peroxidase-like
0051123 4897 2008-09-10 d1xvqa_ Glutathione peroxidase-like
0052322 1669 2008-09-10 d2cvba1 Glutathione peroxidase-like
0038196 517 2005-09-08 d1gp1a_ Glutathione peroxidase-like
0051931 1488 2008-09-10 d2b7ka1 Glutathione peroxidase-like
0052617 927 2008-09-10 d2f8aa1 Glutathione peroxidase-like
0052983 4127 2008-09-10 d2h01a1 Glutathione peroxidase-like
0043753 3519 2005-09-08 d1st9a_ Glutathione peroxidase-like
0046445 5791 2008-09-10 d1e2ya_ Glutathione peroxidase-like
0048388 3036 2008-09-10 d1nm3a2 Glutathione peroxidase-like
0048990 5086 2008-09-10 d1qmva_ Glutathione peroxidase-like
0051667 4208 2008-09-10 d1zyea1 Glutathione peroxidase-like
0052802 6704 2008-09-10 d2fy6a1 Glutathione peroxidase-like
0037710 54 2005-09-08 d1foha3 Glutathione peroxidase-like
0039527 3018 2005-09-08 d1jfua_ Glutathione peroxidase-like
0041722 2555 2005-09-08 d1o73a_ Glutathione peroxidase-like
0043030 946 2005-09-08 d1qxha_ Glutathione peroxidase-like
0047173 3086 2008-09-10 d1hd2a_ Glutathione peroxidase-like
0048298 4805 2008-09-10 d1n8ja_ Glutathione peroxidase-like
0048804 3250 2008-09-10 d1prxa_ Glutathione peroxidase-like
0049667 3595 2008-09-10 d1tp9a1 Glutathione peroxidase-like
0050985 3285 2008-09-10 d1xiya1 Glutathione peroxidase-like
0048033 4649 2008-09-10 d1lu4a_ Glutathione peroxidase-like
0050915 1715 2008-09-10 d1xcca_ Glutathione peroxidase-like
0051497 3120 2008-09-10 d1z5ye1 Glutathione peroxidase-like
0051923 3149 2008-09-10 d2b5xa1 Glutathione peroxidase-like
0037363 365 2005-09-08 d1f37a_ Thioredoxin-like 2Fe-2S ferredoxin
0039431 433 2005-09-08 d1j9ba_ ArsC-like
0051483 1195 2008-09-10 d1z3ea1 ArsC-like
0049249 1364 2008-09-10 d1rw1a_ ArsC-like
0049102 1453 2008-09-10 d1r4wa_ DsbA-like
0037799 602 2005-09-08 d1fvka_ DsbA-like
0035499 1347 2005-09-08 d1beda_ DsbA-like
0044455 749 2005-09-08 d1un2a_ DsbA-like
0051503 1050 2008-09-10 d1z6ma1 DsbA-like
0039303 446 2005-09-08 d1j0fa_ SH3BGR (SH3-binding, glutamic acid-rich protein-like)
0043137 336 2005-09-08 d1r5pa_ KaiB-like
0049544 161 2008-09-10 d1t4za_ KaiB-like
0050672 5601 2008-09-10 d1woua_ Txnl5-like
0050108 1103 2008-09-10 d1v9wa_ Txnl5-like
0050957 47 2008-09-10 d1xg8a_ YuzD-like
0050680 29 2008-09-10 d1wpia1 YKR049C-like
0051850 111 2008-09-10 d2axoa1 Atu2684-like
0053013 719 2008-09-10 d2hfda1 HyaE-like
0052504 2007 2008-09-10 d2es7a1 HyaE-like
0052770 1203 2008-09-10 d2fug21 NQO2-like
0049305 218 2008-09-10 d1s3aa1 Mitochondrial ribosomal protein L51/S25/CI-B8 domain
0052631 261 2008-09-10 d2fa8a1 Selenoprotein W-related
0051701 73 2008-09-10 d2a4ha1 Selenoprotein W-related
0051694 80 2008-09-10 d2a2pa1 Selenoprotein W-related
0053833 412 2010-05-31 d2dlxa1 UAS domain