SUPERFAMILY 1.75 HMM library and genome assignments server

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TK C-terminal domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 12 SUPERFAMILY models representing the TK C-terminal domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0042763 543 2005-09-08 d1qgda3 Transketolase C-terminal domain-like
0039199 554 2005-09-08 d1itza3 Transketolase C-terminal domain-like
0044103 522 2005-09-08 d1trka3 Transketolase C-terminal domain-like
0049137 634 2008-09-10 d1r9ja3 Transketolase C-terminal domain-like
0040414 262 2005-09-08 d1l8aa3 Transketolase C-terminal domain-like
0036598 763 2005-09-08 d1dtwb2 Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
0044441 775 2005-09-08 d1umdb2 Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
0050396 3494 2008-09-10 d1w85b2 Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
0041404 773 2005-09-08 d1ni4b2 Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
0039060 624 2005-09-08 d1ik6a2 Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
0042966 737 2005-09-08 d1qs0b2 Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
0035298 345 2005-09-08 d1b0pa3 Pyruvate-ferredoxin oxidoreductase, PFOR, domain II