SUPERFAMILY 1.75 HMM library and genome assignments server

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PK C-terminal domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 7 SUPERFAMILY models representing the PK C-terminal domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036702 334 2005-09-08 d1e0ta3 Pyruvate kinase, C-terminal domain
0042357 346 2005-09-08 d1pkla3 Pyruvate kinase, C-terminal domain
0034868 347 2005-09-08 d1a49a3 Pyruvate kinase, C-terminal domain
0040514 345 2005-09-08 d1liua3 Pyruvate kinase, C-terminal domain
0034860 349 2005-09-08 d1a3wa3 Pyruvate kinase, C-terminal domain
0049547 66 2008-09-10 d1t57a_ MTH1675-like
0050265 65 2008-09-10 d1vp8a_ MTH1675-like