SUPERFAMILY 1.75 HMM library and genome assignments server

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Class II aaRS ABD-related superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 15 SUPERFAMILY models representing the Class II aaRS ABD-related superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035004 357 2005-09-08 d1adja1 Anticodon-binding domain of Class II aaRS
0041631 988 2005-09-08 d1nyra1 Anticodon-binding domain of Class II aaRS
0040151 477 2005-09-08 d1kmma1 Anticodon-binding domain of Class II aaRS
0037214 873 2005-09-08 d1evla1 Anticodon-binding domain of Class II aaRS
0044672 95 2005-09-08 d1v95a_ Anticodon-binding domain of Class II aaRS
0041424 731 2005-09-08 d1nj8a1 Anticodon-binding domain of Class II aaRS
0038521 710 2005-09-08 d1hc7a1 Anticodon-binding domain of Class II aaRS
0050705 2546 2008-09-10 d1wu7a1 Anticodon-binding domain of Class II aaRS
0035193 485 2005-09-08 d1atia1 Anticodon-binding domain of Class II aaRS
0042728 839 2005-09-08 d1qe0a1 Anticodon-binding domain of Class II aaRS
0041420 777 2005-09-08 d1nj1a1 Anticodon-binding domain of Class II aaRS
0052834 798 2008-09-10 d2g4ca1 Anticodon-binding domain of Class II aaRS
0037946 187 2005-09-08 d1g5ha1 Anticodon-binding domain of Class II aaRS
0052344 255 2008-09-10 d2cxha1 Brix domain
0050405 169 2008-09-10 d1w94a1 Brix domain