SUPERFAMILY 1.75 HMM library and genome assignments server

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Aminoacid dehydrogenase-like, N-terminal domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 22 SUPERFAMILY models representing the Aminoacid dehydrogenase-like, N-terminal domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035544 323 2005-09-08 d1bgva2 Aminoacid dehydrogenases
0038762 356 2005-09-08 d1hwxa2 Aminoacid dehydrogenases
0037204 390 2005-09-08 d1euza2 Aminoacid dehydrogenases
0035811 303 2005-09-08 d1c1da2 Aminoacid dehydrogenases
0050104 1540 2008-09-10 d1v9la2 Aminoacid dehydrogenases
0035317 355 2005-09-08 d1b26a2 Aminoacid dehydrogenases
0038260 394 2005-09-08 d1gtma2 Aminoacid dehydrogenases
0035734 399 2005-09-08 d1bvua2 Aminoacid dehydrogenases
0040474 334 2005-09-08 d1leha2 Aminoacid dehydrogenases
0034873 362 2005-09-08 d1a4ia2 Tetrahydrofolate dehydrogenase/cyclohydrolase
0036929 4 2005-09-08 d1edza2 Tetrahydrofolate dehydrogenase/cyclohydrolase
0035291 365 2005-09-08 d1b0aa2 Tetrahydrofolate dehydrogenase/cyclohydrolase
0036518 368 2005-09-08 d1do8a2 Malic enzyme N-domain
0040549 361 2005-09-08 d1llqa2 Malic enzyme N-domain
0044859 388 2005-09-08 d1vl6a2 Malic enzyme N-domain
0038223 397 2005-09-08 d1gq2a2 Malic enzyme N-domain
0040667 28 2005-09-08 d1lu9a2 Methylene-tetrahydromethanopterin dehydrogenase
0042181 365 2005-09-08 d1p77a2 Shikimate dehydrogenase-like
0041513 361 2005-09-08 d1npya2 Shikimate dehydrogenase-like
0041638 377 2005-09-08 d1nyta2 Shikimate dehydrogenase-like
0041505 376 2005-09-08 d1npda2 Shikimate dehydrogenase-like
0041590 377 2005-09-08 d1nvta2 Shikimate dehydrogenase-like