SUPERFAMILY 1.75 HMM library and genome assignments server

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PLP-dependent transferases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 92 SUPERFAMILY models representing the PLP-dependent transferases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045639 1051 2005-09-08 d7aata_ AAT-like
0050261 11696 2008-09-10 d1vp4a_ AAT-like
0042806 1137 2005-09-08 d1qisa_ AAT-like
0045171 1602 2005-09-08 d2ay1a_ AAT-like
0047956 8685 2008-09-10 d1lc5a_ AAT-like
0049754 11650 2008-09-10 d1u08a_ AAT-like
0044595 2816 2005-09-08 d1v2da_ AAT-like
0050390 11064 2008-09-10 d1w7la_ AAT-like
0035073 698 2005-09-08 d1ajsa_ AAT-like
0046965 6128 2008-09-10 d1gdea_ AAT-like
0050977 7266 2008-09-10 d1xi9a_ AAT-like
0039341 4079 2005-09-08 d1j32a_ AAT-like
0045068 856 2005-09-08 d1yaaa_ AAT-like
0046024 10663 2008-09-10 d1bw0a_ AAT-like
0052862 7074 2008-09-10 d2gb3a1 AAT-like
0037569 2406 2005-09-08 d1fg7a_ AAT-like
0041674 3746 2005-09-08 d1o4sa_ AAT-like
0044523 1720 2005-09-08 d1uu1a_ AAT-like
0051323 4577 2008-09-10 d1yiza1 AAT-like
0040526 314 2005-09-08 d1lk9a_ AAT-like
0045231 835 2005-09-08 d2csta_ AAT-like
0050076 2180 2008-09-10 d1v72a1 AAT-like
0050768 4746 2008-09-10 d1x0ma1 AAT-like
0053335 12537 2008-09-10 d3tata_ AAT-like
0035589 4240 2005-09-08 d1bjwa_ AAT-like
0047581 410 2008-09-10 d1jg8a_ AAT-like
0049486 4868 2008-09-10 d1svva_ AAT-like
0050696 10821 2008-09-10 d1wsta1 AAT-like
0035246 229 2005-09-08 d1ax4a_ Beta-eliminating lyases
0044083 541 2005-09-08 d1tpla_ Beta-eliminating lyases
0054692 1170 2010-05-31 d2v1pa1 Beta-eliminating lyases
0046087 1288 2008-09-10 d1c7ga_ Beta-eliminating lyases
0041260 1886 2005-09-08 d1n8pa_ Cystathionine synthase-like
0047095 3478 2008-09-10 d1h0ca_ Cystathionine synthase-like
0048747 12034 2008-09-10 d1pffa_ Cystathionine synthase-like
0051195 9993 2008-09-10 d1y4ia1 Cystathionine synthase-like
0046056 2919 2008-09-10 d1c0na_ Cystathionine synthase-like
0046584 5347 2008-09-10 d1elua_ Cystathionine synthase-like
0038034 1758 2005-09-08 d1gc0a_ Cystathionine synthase-like
0046206 3629 2008-09-10 d1cs1a_ Cystathionine synthase-like
0047441 1795 2008-09-10 d1iuga_ Cystathionine synthase-like
0049070 6483 2008-09-10 d1qz9a_ Cystathionine synthase-like
0052302 5489 2008-09-10 d2ctza1 Cystathionine synthase-like
0036780 2016 2005-09-08 d1e5ea_ Cystathionine synthase-like
0046089 7836 2008-09-10 d1c7na_ Cystathionine synthase-like
0046547 7093 2008-09-10 d1eg5a_ Cystathionine synthase-like
0049524 4557 2008-09-10 d1t3ia_ Cystathionine synthase-like
0046165 13220 2008-09-10 d1cl1a_ Cystathionine synthase-like
0047340 4633 2008-09-10 d1ibja_ Cystathionine synthase-like
0048952 14286 2008-09-10 d1qgna_ Cystathionine synthase-like
0052164 1819 2008-09-10 d2ch1a1 Cystathionine synthase-like
0048074 11734 2008-09-10 d1m32a_ Cystathionine synthase-like
0051993 1072 2008-09-10 d2bkwa1 Cystathionine synthase-like
0042144 2179 2005-09-08 d1p3wa_ Cystathionine synthase-like
0044807 2073 2005-09-08 d1vjoa_ Cystathionine synthase-like
0046255 4603 2008-09-10 d1d2fa_ Cystathionine synthase-like
0037039 340 2005-09-08 d1ejia_ GABA-aminotransferase-like
0046154 2119 2008-09-10 d1cj0a_ GABA-aminotransferase-like
0052157 6925 2008-09-10 d2cfba1 GABA-aminotransferase-like
0040134 1562 2005-09-08 d1kl1a_ GABA-aminotransferase-like
0052943 6666 2008-09-10 d2gsaa_ GABA-aminotransferase-like
0035586 363 2005-09-08 d1bjna_ GABA-aminotransferase-like
0041704 1664 2005-09-08 d1o69a_ GABA-aminotransferase-like
0045973 10148 2008-09-10 d1bj4a_ GABA-aminotransferase-like
0051517 4282 2008-09-10 d1z7da1 GABA-aminotransferase-like
0040897 1197 2005-09-08 d1mdoa_ GABA-aminotransferase-like
0043583 1488 2005-09-08 d1sffa_ GABA-aminotransferase-like
0045392 1477 2005-09-08 d2oata_ GABA-aminotransferase-like
0048571 6742 2008-09-10 d1ohwa_ GABA-aminotransferase-like
0050157 10797 2008-09-10 d1vefa1 GABA-aminotransferase-like
0052070 3340 2008-09-10 d2bwna1 GABA-aminotransferase-like
0035700 381 2005-09-08 d1bt4a_ GABA-aminotransferase-like
0051723 715 2008-09-10 d2a7va1 GABA-aminotransferase-like
0035401 2597 2005-09-08 d1b8ga_ GABA-aminotransferase-like
0045909 3775 2008-09-10 d1b9ha_ GABA-aminotransferase-like
0050340 758 2008-09-10 d1w23a_ GABA-aminotransferase-like
0036406 1639 2005-09-08 d1dfoa_ GABA-aminotransferase-like
0042809 1425 2005-09-08 d1qj5a_ GABA-aminotransferase-like
0046747 2293 2008-09-10 d1fc4a_ GABA-aminotransferase-like
0038952 2578 2005-09-08 d1iaya_ GABA-aminotransferase-like
0046007 4845 2008-09-10 d1bs0a_ GABA-aminotransferase-like
0051601 5233 2008-09-10 d1zoda1 GABA-aminotransferase-like
0052731 3477 2008-09-10 d2fnua1 GABA-aminotransferase-like
0035846 448 2005-09-08 d1c4ka2 Ornithine decarboxylase major domain
0042383 365 2005-09-08 d1pmma_ Pyridoxal-dependent decarboxylase
0047670 1058 2008-09-10 d1js3a_ Pyridoxal-dependent decarboxylase
0050754 5001 2008-09-10 d1wyub1 Glycine dehydrogenase subunits (GDC-P)
0050753 1339 2008-09-10 d1wyua1 Glycine dehydrogenase subunits (GDC-P)
0051757 4942 2008-09-10 d2aeua1 SelA-like
0054823 522 2010-05-31 d3bc8a1 SepSecS-like
0053867 7542 2010-05-31 d2e7ja1 SepSecS-like
0054765 1488 2010-05-31 d2z67a1 SepSecS-like