SUPERFAMILY 1.75 HMM library and genome assignments server

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MurD-like peptide ligases, catalytic domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 7 SUPERFAMILY models representing the MurD-like peptide ligases, catalytic domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0042137 733 2005-09-08 d1p3da3 MurCDEF
0046487 434 2008-09-10 d1e8ca3 MurCDEF
0045483 615 2005-09-08 d2uaga3 MurCDEF
0038085 1154 2005-09-08 d1gg4a4 MurCDEF
0047522 396 2008-09-10 d1j6ua3 MurCDEF
0041699 750 2005-09-08 d1o5za2 Folylpolyglutamate synthetase
0052866 2973 2008-09-10 d2gc6a2 Folylpolyglutamate synthetase