SUPERFAMILY 1.75 HMM library and genome assignments server

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Aspartate/glutamate racemase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 5 SUPERFAMILY models representing the Aspartate/glutamate racemase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045890 504 2008-09-10 d1b74a1 Aspartate/glutamate racemase
0047575 420 2008-09-10 d1jfla1 Aspartate/glutamate racemase
0035381 307 2005-09-08 d1b74a2 Aspartate/glutamate racemase
0047438 440 2008-09-10 d1iu9a_ Aspartate/glutamate racemase
0047576 458 2008-09-10 d1jfla2 Aspartate/glutamate racemase