SUPERFAMILY 1.75 HMM library and genome assignments server

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Aconitase iron-sulfur domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 3 SUPERFAMILY models representing the Aconitase iron-sulfur domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0034996 640 2005-09-08 d1acoa2 Aconitase iron-sulfur domain
0051895 2800 2008-09-10 d2b3ya2 Aconitase iron-sulfur domain
0040390 630 2005-09-08 d1l5ja3 Aconitase iron-sulfur domain