SUPERFAMILY 1.75 HMM library and genome assignments server

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Phosphoglucomutase, first 3 domains superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 9 SUPERFAMILY models representing the Phosphoglucomutase, first 3 domains superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045549 757 2005-09-08 d3pmga1 Phosphoglucomutase, first 3 domains
0040057 606 2005-09-08 d1kfia1 Phosphoglucomutase, first 3 domains
0039873 801 2005-09-08 d1k2yx1 Phosphoglucomutase, first 3 domains
0045551 378 2005-09-08 d3pmga3 Phosphoglucomutase, first 3 domains
0040059 376 2005-09-08 d1kfia3 Phosphoglucomutase, first 3 domains
0039875 407 2005-09-08 d1k2yx3 Phosphoglucomutase, first 3 domains
0045550 556 2005-09-08 d3pmga2 Phosphoglucomutase, first 3 domains
0040058 316 2005-09-08 d1kfia2 Phosphoglucomutase, first 3 domains
0039874 709 2005-09-08 d1k2yx2 Phosphoglucomutase, first 3 domains