SUPERFAMILY 1.75 HMM library and genome assignments server

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UDP-Glycosyltransferase/glycogen phosphorylase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 24 SUPERFAMILY models representing the UDP-Glycosyltransferase/glycogen phosphorylase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035835 2 2005-09-08 d1c3ja_ beta-Glucosyltransferase (DNA-modifying)
0046669 450 2008-09-10 d1f0ka_ Peptidoglycan biosynthesis glycosyltransferase MurG
0048500 497 2008-09-10 d1o6ca_ UDP-N-acetylglucosamine 2-epimerase
0046716 797 2008-09-10 d1f6da_ UDP-N-acetylglucosamine 2-epimerase
0044616 216 2005-09-08 d1v4va_ UDP-N-acetylglucosamine 2-epimerase
0052910 1192 2008-09-10 d2gj4a1 Oligosaccharide phosphorylase
0048983 881 2008-09-10 d1qm5a_ Oligosaccharide phosphorylase
0046587 843 2008-09-10 d1em6a_ Oligosaccharide phosphorylase
0051304 497 2008-09-10 d1ygpa_ Oligosaccharide phosphorylase
0047375 1298 2008-09-10 d1iira_ Gtf glycosyltransferase
0042392 283 2005-09-08 d1pn3a_ Gtf glycosyltransferase
0049238 694 2008-09-10 d1rrva_ Gtf glycosyltransferase
0038341 280 2005-09-08 d1gz5a_ Trehalose-6-phosphate synthase, OtsA
0048814 1572 2008-09-10 d1pswa_ ADP-heptose LPS heptosyltransferase II
0051981 6238 2008-09-10 d2bisa1 Glycosyl transferases group 1
0043452 1301 2005-09-08 d1rzua_ Glycosyl transferases group 1
0052623 10289 2008-09-10 d2f9fa1 Glycosyl transferases group 1
0053131 4324 2008-09-10 d2iw1a1 Glycosyl transferases group 1
0052533 17 2008-09-10 d2ex0a1 Sialyltransferase-like
0054538 3989 2010-05-31 d2pq6a1 UDPGT-like
0053693 3513 2010-05-31 d2acva1 UDPGT-like
0054711 3669 2010-05-31 d2vcha1 UDPGT-like
0053762 3891 2010-05-31 d2c1xa1 UDPGT-like
0054312 610 2010-05-31 d2nzwa1 FucT-like