SUPERFAMILY 1.75 HMM library and genome assignments server

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Glutaminase/Asparaginase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 8 SUPERFAMILY models representing the Glutaminase/Asparaginase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045600 253 2005-09-08 d4pgaa_ Glutaminase/Asparaginase
0038578 254 2005-09-08 d1hfka_ Glutaminase/Asparaginase
0052389 986 2008-09-10 d2d6fa2 Glutaminase/Asparaginase
0045589 253 2005-09-08 d4ecaa_ Glutaminase/Asparaginase
0035046 253 2005-09-08 d1agxa_ Glutaminase/Asparaginase
0051611 991 2008-09-10 d1zq1a2 Glutaminase/Asparaginase
0045006 253 2005-09-08 d1wsaa_ Glutaminase/Asparaginase
0054359 1051 2010-05-31 d2ocda1 Glutaminase/Asparaginase