SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Periplasmic binding protein-like II superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 83 SUPERFAMILY models representing the Periplasmic binding protein-like II superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0040650 1535 2005-09-08 d1lsta_ Phosphate binding protein-like
0044486 1336 2005-09-08 d1uqwa_ Phosphate binding protein-like
0047371 4353 2008-09-10 d1ii5a_ Phosphate binding protein-like
0048727 4265 2008-09-10 d1pb7a_ Phosphate binding protein-like
0049987 866 2008-09-10 d1us5a_ Phosphate binding protein-like
0051126 2345 2008-09-10 d1xvxa_ Phosphate binding protein-like
0052357 375 2008-09-10 d2czla1 Phosphate binding protein-like
0054389 1939 2010-05-31 d2onsa1 Phosphate binding protein-like
0038704 1484 2005-09-08 d1hsla_ Phosphate binding protein-like
0042594 685 2005-09-08 d1q35a_ Phosphate binding protein-like
0045790 10680 2008-09-10 d1al3a_ Phosphate binding protein-like
0047899 397 2008-09-10 d1kwha_ Phosphate binding protein-like
0051046 5309 2008-09-10 d1xoca1 Phosphate binding protein-like
0051520 822 2008-09-10 d1z7me1 Phosphate binding protein-like
0042201 290 2005-09-08 d1p99a_ Phosphate binding protein-like
0045538 590 2005-09-08 d3mbpa_ Phosphate binding protein-like
0046627 3538 2008-09-10 d1eu8a_ Phosphate binding protein-like
0047464 1127 2008-09-10 d1ixha_ Phosphate binding protein-like
0050155 822 2008-09-10 d1ve4a1 Phosphate binding protein-like
0051191 862 2008-09-10 d1y3na1 Phosphate binding protein-like
0052509 830 2008-09-10 d2esna2 Phosphate binding protein-like
0043543 509 2005-09-08 d1sbpa_ Phosphate binding protein-like
0045817 662 2008-09-10 d1atga_ Phosphate binding protein-like
0046378 5324 2008-09-10 d1dpea_ Phosphate binding protein-like
0047313 10667 2008-09-10 d1i6aa_ Phosphate binding protein-like
0048497 821 2008-09-10 d1o63a_ Phosphate binding protein-like
0049916 3382 2008-09-10 d1uiua_ Phosphate binding protein-like
0051099 4637 2008-09-10 d1xt8a1 Phosphate binding protein-like
0051706 4184 2008-09-10 d2a5sa1 Phosphate binding protein-like
0054307 490 2010-05-31 d2nxoa1 Phosphate binding protein-like
0037070 879 2005-09-08 d1elja_ Phosphate binding protein-like
0042407 818 2005-09-08 d1pota_ Phosphate binding protein-like
0045745 1300 2008-09-10 d1a99a_ Phosphate binding protein-like
0046289 4375 2008-09-10 d1d9ya_ Phosphate binding protein-like
0047112 824 2008-09-10 d1h3da1 Phosphate binding protein-like
0049487 673 2008-09-10 d1sw5a_ Phosphate binding protein-like
0050446 3354 2008-09-10 d1wdna_ Phosphate binding protein-like
0051251 4344 2008-09-10 d1y9ua_ Phosphate binding protein-like
0052806 10698 2008-09-10 d2fyia1 Phosphate binding protein-like
0054694 1007 2010-05-31 d2v3qa1 Phosphate binding protein-like
0041385 696 2005-09-08 d1nh8a1 Phosphate binding protein-like
0044496 513 2005-09-08 d1ursa_ Phosphate binding protein-like
0047462 11874 2008-09-10 d1ixca2 Phosphate binding protein-like
0048733 1289 2008-09-10 d1pc3a_ Phosphate binding protein-like
0049998 10421 2008-09-10 d1utha_ Phosphate binding protein-like
0051127 2248 2008-09-10 d1xvya_ Phosphate binding protein-like
0054440 43 2010-05-31 d2ozza1 Phosphate binding protein-like
0043183 226 2005-09-08 d1r9la_ Phosphate binding protein-like
0045793 581 2008-09-10 d1amfa_ Phosphate binding protein-like
0048393 3107 2008-09-10 d1nnfa_ Phosphate binding protein-like
0049726 2534 2008-09-10 d1twya_ Phosphate binding protein-like
0051090 2183 2008-09-10 d1xs5a_ Phosphate binding protein-like
0051539 142 2008-09-10 d1zbma1 Phosphate binding protein-like
0054095 196 2010-05-31 d2i6ea1 Phosphate binding protein-like
0042263 262 2005-09-08 d1pdaa1 Phosphate binding protein-like
0045575 248 2005-09-08 d3thia_ Phosphate binding protein-like
0046857 994 2008-09-10 d1ftka_ Phosphate binding protein-like
0047567 3155 2008-09-10 d1jeta_ Phosphate binding protein-like
0049318 4028 2008-09-10 d1s50a1 Phosphate binding protein-like
0050299 5053 2008-09-10 d1vr5a1 Phosphate binding protein-like
0051197 4117 2008-09-10 d1y4ta_ Phosphate binding protein-like
0052589 1764 2008-09-10 d2f34a1 Phosphate binding protein-like
0054618 1043 2010-05-31 d2qmwa1 Phosphate binding protein-like
0045863 285 2008-09-10 d1b1xa1 Transferrin
0046398 411 2008-09-10 d1dtza1 Transferrin
0046370 874 2008-09-10 d1dota1 Transferrin
0047137 893 2008-09-10 d1h76a1 Transferrin
0049612 323 2008-09-10 d1tfaa_ Transferrin
0052996 920 2008-09-10 d2hava1 Transferrin
0035894 527 2005-09-08 d1cb6a2 Transferrin
0046117 466 2008-09-10 d1ce2a1 Transferrin
0049271 904 2008-09-10 d1ryoa_ Transferrin
0039785 217 2005-09-08 d1jw1a1 Transferrin
0047639 317 2008-09-10 d1jnfa1 Transferrin
0045864 517 2008-09-10 d1b1xa2 Transferrin
0046557 830 2008-09-10 d1eh3a_ Transferrin
0052374 570 2008-09-10 d2d3ia2 Transferrin
0039658 261 2005-09-08 d1jnfa2 Transferrin
0046371 597 2008-09-10 d1dota2 Transferrin
0047138 335 2008-09-10 d1h76a2 Transferrin
0036601 576 2005-09-08 d1dtza2 Transferrin
0046118 526 2008-09-10 d1ce2a2 Transferrin
0054445 29 2010-05-31 d2p0sa1 PG0945 N-terminal domain-like