SUPERFAMILY 1.75 HMM library and genome assignments server

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Cytidine deaminase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 23 SUPERFAMILY models representing the Cytidine deaminase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035093 353 2005-09-08 d1alna1 Cytidine deaminase
0052373 1010 2008-09-10 d2d30a1 Cytidine deaminase
0041046 317 2005-09-08 d1mq0a_ Cytidine deaminase
0035094 605 2005-09-08 d1alna2 Cytidine deaminase
0043140 697 2005-09-08 d1r5ta_ Cytidine deaminase
0039755 281 2005-09-08 d1jtka_ Cytidine deaminase
0050664 437 2008-09-10 d1wn5a1 Cytidine deaminase
0052747 1096 2008-09-10 d2fr5a1 Cytidine deaminase
0042364 244 2005-09-08 d1pkxa2 AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
0037995 244 2005-09-08 d1g8ma2 AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
0051560 1114 2008-09-10 d1zcza2 AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
0051891 1797 2008-09-10 d2b3ja1 Deoxycytidylate deaminase-like
0051482 1784 2008-09-10 d1z3aa1 Deoxycytidylate deaminase-like
0053055 2873 2008-09-10 d2hxva2 Deoxycytidylate deaminase-like
0050639 1810 2008-09-10 d1wkqa_ Deoxycytidylate deaminase-like
0044240 840 2005-09-08 d1uaqa_ Deoxycytidylate deaminase-like
0051727 1784 2008-09-10 d2a8na1 Deoxycytidylate deaminase-like
0050730 1793 2008-09-10 d1wwra1 Deoxycytidylate deaminase-like
0052851 1664 2008-09-10 d2g84a1 Deoxycytidylate deaminase-like
0050283 2353 2008-09-10 d1vq2a_ Deoxycytidylate deaminase-like
0051897 1572 2008-09-10 d2b3za2 Deoxycytidylate deaminase-like
0044829 5 2005-09-08 d1vk9a_ Hypothetical protein TM1506
0054555 657 2010-05-31 d2pw9a1 FdhD/NarQ