SUPERFAMILY 1.75 HMM library and genome assignments server

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Lysozyme-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 43 SUPERFAMILY models representing the Lysozyme-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036652 281 2005-09-08 d1dxja_ Family 19 glycosidase
0036072 279 2005-09-08 d1cnsa_ Family 19 glycosidase
0037418 191 2005-09-08 d1f6ra_ C-type lysozyme
0040570 207 2005-09-08 d1lmqa_ C-type lysozyme
0046990 319 2008-09-10 d1ghla_ C-type lysozyme
0035090 176 2005-09-08 d1alca_ C-type lysozyme
0038582 183 2005-09-08 d1hfxa_ C-type lysozyme
0040641 252 2005-09-08 d1lsga1 C-type lysozyme
0045261 229 2005-09-08 d2eqla_ C-type lysozyme
0042950 234 2005-09-08 d1qqya_ C-type lysozyme
0047673 996 2008-09-10 d1jsea_ C-type lysozyme
0035420 177 2005-09-08 d1b9oa_ C-type lysozyme
0039048 223 2005-09-08 d1iiza_ C-type lysozyme
0046807 233 2008-09-10 d1fkqa_ C-type lysozyme
0038053 232 2005-09-08 d1gd6a_ C-type lysozyme
0053219 943 2008-09-10 d2nwdx1 C-type lysozyme
0039764 240 2005-09-08 d1juga_ C-type lysozyme
0047448 966 2008-09-10 d1ivma_ C-type lysozyme
0038595 222 2005-09-08 d1hhla_ C-type lysozyme
0041358 202 2005-09-08 d1nf5a_ C-type lysozyme
0034790 80 2005-09-08 d189la_ Phage lysozyme
0050993 389 2008-09-10 d1xjta_ Phage lysozyme
0039756 82 2005-09-08 d1jtma_ Phage lysozyme
0042163 69 2005-09-08 d1p5ca_ Phage lysozyme
0053597 287 2010-05-31 d1p37a_ Phage lysozyme
0034789 76 2005-09-08 d174la_ Phage lysozyme
0039862 75 2005-09-08 d1k28a3 Phage lysozyme
0042085 85 2005-09-08 d1oyua_ Phage lysozyme
0034793 78 2005-09-08 d192la_ Phage lysozyme
0040610 76 2005-09-08 d1lpya_ Phage lysozyme
0034786 82 2005-09-08 d169la_ Phage lysozyme
0035100 35 2005-09-08 d1am7a_ Lambda lysozyme
0045677 1803 2008-09-10 d153la_ G-type lysozyme
0042970 607 2005-09-08 d1qsaa2 Bacterial muramidase, catalytic domain
0043002 322 2005-09-08 d1qusa_ Bacterial muramidase, catalytic domain
0035984 20 2005-09-08 d1chka_ Chitosanase
0042765 22 2005-09-08 d1qgia_ Chitosanase
0053645 321 2010-05-31 d1xsfa1 RPF-like
0054141 242 2010-05-31 d2ikba1 NMB1012-like
0054289 258 2010-05-31 d2nr7a1 NMB1012-like
0054408 2768 2010-05-31 d2oqoa1 PBP transglycosylase domain-like
0054383 2755 2010-05-31 d2olua1 PBP transglycosylase domain-like
0054135 4 2010-05-31 d2igsa1 PA2222-like