SUPERFAMILY 1.75 HMM library and genome assignments server

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Penicillin-binding protein 2x (pbp-2x), c-terminal domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 5 SUPERFAMILY models representing the Penicillin-binding protein 2x (pbp-2x), c-terminal domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047726 87 2008-09-10 d1k25a1 Penicillin-binding protein 2x (pbp-2x), c-terminal domain
0042861 93 2005-09-08 d1qmea1 Penicillin-binding protein 2x (pbp-2x), c-terminal domain
0043332 100 2005-09-08 d1rp5a2 Penicillin-binding protein 2x (pbp-2x), c-terminal domain
0039857 101 2005-09-08 d1k25a2 Penicillin-binding protein 2x (pbp-2x), c-terminal domain
0042862 87 2005-09-08 d1qmea2 Penicillin-binding protein 2x (pbp-2x), c-terminal domain