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Ribosomal protein S5 domain 2-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 58 SUPERFAMILY models representing the Ribosomal protein S5 domain 2-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0041171 181 2005-09-08 d1n0ua3 Translational machinery components
0052055 1915 2008-09-10 d2bv3a3 Translational machinery components
0054587 1029 2010-05-31 d2qale1 Translational machinery components
0050450 1805 2008-09-10 d1wdta3 Translational machinery components
0037619 327 2005-09-08 d1fjgi_ Translational machinery components
0053987 1025 2010-05-31 d2gy9i1 Translational machinery components
0037617 347 2005-09-08 d1fjge1 Translational machinery components
0042360 346 2005-09-08 d1pkpa1 Translational machinery components
0034909 210 2005-09-08 d1a6fa_ RNase P protein
0036295 209 2005-09-08 d1d6ta_ RNase P protein
0041639 209 2005-09-08 d1nz0a_ RNase P protein
0035363 293 2005-09-08 d1b63a1 DNA gyrase/MutL, second domain
0041085 24 2005-09-08 d1mu5a2 DNA gyrase/MutL, second domain
0042490 725 2005-09-08 d1pvga1 DNA gyrase/MutL, second domain
0037014 752 2005-09-08 d1ei1a1 DNA gyrase/MutL, second domain
0038464 303 2005-09-08 d1h7sa1 DNA gyrase/MutL, second domain
0040104 745 2005-09-08 d1kija1 DNA gyrase/MutL, second domain
0043463 740 2005-09-08 d1s16a1 DNA gyrase/MutL, second domain
0043148 726 2005-09-08 d1r6la1 Ribonuclease PH domain 1-like
0054209 2553 2010-05-31 d2je6a1 Ribonuclease PH domain 1-like
0044291 711 2005-09-08 d1udsa1 Ribonuclease PH domain 1-like
0053737 2856 2010-05-31 d2ba0d1 Ribonuclease PH domain 1-like
0054270 1490 2010-05-31 d2nn6d1 Ribonuclease PH domain 1-like
0036738 430 2005-09-08 d1e3ha2 Ribonuclease PH domain 1-like
0054264 1161 2010-05-31 d2nn6a1 Ribonuclease PH domain 1-like
0054274 2039 2010-05-31 d2nn6f1 Ribonuclease PH domain 1-like
0054268 2286 2010-05-31 d2nn6c1 Ribonuclease PH domain 1-like
0054211 2896 2010-05-31 d2je6b1 Ribonuclease PH domain 1-like
0053739 2763 2010-05-31 d2ba0g1 Ribonuclease PH domain 1-like
0054272 2230 2010-05-31 d2nn6e1 Ribonuclease PH domain 1-like
0036739 500 2005-09-08 d1e3ha3 Ribonuclease PH domain 1-like
0042083 733 2005-09-08 d1oysa1 Ribonuclease PH domain 1-like
0054266 2765 2010-05-31 d2nn6b1 Ribonuclease PH domain 1-like
0037810 695 2005-09-08 d1fwka1 GHMP Kinase, N-terminal domain
0037595 452 2005-09-08 d1fi4a1 GHMP Kinase, N-terminal domain
0040285 492 2005-09-08 d1kvka1 GHMP Kinase, N-terminal domain
0042329 514 2005-09-08 d1piea1 GHMP Kinase, N-terminal domain
0039904 144 2005-09-08 d1k47a1 GHMP Kinase, N-terminal domain
0041876 505 2005-09-08 d1oj4a1 GHMP Kinase, N-terminal domain
0040129 687 2005-09-08 d1kkha1 GHMP Kinase, N-terminal domain
0043490 607 2005-09-08 d1s4ea1 GHMP Kinase, N-terminal domain
0044305 523 2005-09-08 d1ueka1 GHMP Kinase, N-terminal domain
0050714 983 2008-09-10 d1wuua1 GHMP Kinase, N-terminal domain
0040911 4 2005-09-08 d1mg7a1 Early switch protein XOL-1, N-terminal domain
0042146 118 2005-09-08 d1p42a1 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
0052932 584 2008-09-10 d2go3a2 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
0044509 373 2005-09-08 d1usua_ Hsp90 middle domain
0052560 709 2008-09-10 d2f1da1 Imidazole glycerol phosphate dehydratase
0051753 616 2008-09-10 d2ae8a2 Imidazole glycerol phosphate dehydratase
0043249 416 2005-09-08 d1rhya1 Imidazole glycerol phosphate dehydratase
0049170 903 2008-09-10 d1rhya2 Imidazole glycerol phosphate dehydratase
0051752 858 2008-09-10 d2ae8a1 Imidazole glycerol phosphate dehydratase
0052561 1701 2008-09-10 d2f1da2 Imidazole glycerol phosphate dehydratase
0043358 704 2005-09-08 d1rrea_ ATP-dependent protease Lon (La), catalytic domain
0050966 3008 2008-09-10 d1xhka_ ATP-dependent protease Lon (La), catalytic domain
0044774 199 2005-09-08 d1vi7a1 YigZ N-terminal domain-like
0052323 752 2008-09-10 d2cvea1 YigZ N-terminal domain-like
0051205 187 2008-09-10 d1y60a_ Formaldehyde-activating enzyme, FAE