SUPERFAMILY 1.75 HMM library and genome assignments server

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Ubiquitin-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 79 SUPERFAMILY models representing the Ubiquitin-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0042200 816 2005-09-08 d1p98a_ Ubiquitin-related
0045716 3454 2008-09-10 d1a5ra_ Ubiquitin-related
0050459 934 2008-09-10 d1we6a_ Ubiquitin-related
0050737 5077 2008-09-10 d1wx9a1 Ubiquitin-related
0050923 5510 2008-09-10 d1xd3b_ Ubiquitin-related
0044307 943 2005-09-08 d1uela_ Ubiquitin-related
0048122 3682 2008-09-10 d1m94a_ Ubiquitin-related
0050055 974 2008-09-10 d1v5oa_ Ubiquitin-related
0050523 332 2008-09-10 d1wgga_ Ubiquitin-related
0050629 435 2008-09-10 d1wjua_ Ubiquitin-related
0050756 375 2008-09-10 d1wz0a1 Ubiquitin-related
0052069 5302 2008-09-10 d2bwfa1 Ubiquitin-related
0043625 1192 2005-09-08 d1sifa_ Ubiquitin-related
0047534 4476 2008-09-10 d1j8ca_ Ubiquitin-related
0049373 3095 2008-09-10 d1se9a_ Ubiquitin-related
0050488 178 2008-09-10 d1wf9a1 Ubiquitin-related
0050579 3758 2008-09-10 d1wiaa_ Ubiquitin-related
0051477 4324 2008-09-10 d1z2ma2 Ubiquitin-related
0052632 4364 2008-09-10 d2faza1 Ubiquitin-related
0040559 542 2005-09-08 d1lm8b_ Ubiquitin-related
0044629 576 2005-09-08 d1v5ta_ Ubiquitin-related
0048335 1654 2008-09-10 d1ndda_ Ubiquitin-related
0050086 4223 2008-09-10 d1v86a_ Ubiquitin-related
0050736 3998 2008-09-10 d1wx8a1 Ubiquitin-related
0050773 4034 2008-09-10 d1x1ma1 Ubiquitin-related
0035838 1045 2005-09-08 d1c3ta_ Ubiquitin-related
0044282 1203 2005-09-08 d1ud7a_ Ubiquitin-related
0049903 500 2008-09-10 d1uh6a_ Ubiquitin-related
0050520 857 2008-09-10 d1wgda_ Ubiquitin-related
0050620 192 2008-09-10 d1wjna_ Ubiquitin-related
0050750 4248 2008-09-10 d1wy8a1 Ubiquitin-related
0037201 272 2005-09-08 d1euvb_ Ubiquitin-related
0046009 1714 2008-09-10 d1bt0a_ Ubiquitin-related
0050460 1094 2008-09-10 d1we7a_ Ubiquitin-related
0050543 4580 2008-09-10 d1wh3a_ Ubiquitin-related
0051476 4119 2008-09-10 d1z2ma1 Ubiquitin-related
0039275 828 2005-09-08 d1iyfa_ Ubiquitin-related
0044597 262 2005-09-08 d1v2ya_ Ubiquitin-related
0048151 4728 2008-09-10 d1mg8a_ Ubiquitin-related
0050067 119 2008-09-10 d1v6ea_ Ubiquitin-related
0050524 453 2008-09-10 d1wgha_ Ubiquitin-related
0050735 4711 2008-09-10 d1wx7a1 Ubiquitin-related
0043828 153 2005-09-08 d1t0ya_ Ubiquitin-related
0049690 950 2008-09-10 d1ttna1 Ubiquitin-related
0050743 4148 2008-09-10 d1wxva1 Ubiquitin-related
0052254 340 2008-09-10 d2cr5a1 UBX domain
0038476 577 2005-09-08 d1h8ca_ UBX domain
0049310 289 2008-09-10 d1s3sg_ UBX domain
0050607 494 2008-09-10 d1wj4a_ UBX domain
0051789 44 2008-09-10 d2al3a1 UBX domain
0037105 122 2005-09-08 d1eo6a_ GABARAP-like
0054766 341 2010-05-31 d2zjda1 GABARAP-like
0038176 128 2005-09-08 d1gnua_ GABARAP-like
0046977 957 2008-09-10 d1gg3a3 First domain of FERM
0048367 974 2008-09-10 d1ni2a3 First domain of FERM
0046536 963 2008-09-10 d1ef1a3 First domain of FERM
0046958 962 2008-09-10 d1gc7a3 First domain of FERM
0051792 118 2008-09-10 d2al6a3 First domain of FERM
0038417 260 2005-09-08 d1h4ra3 First domain of FERM
0050539 126 2008-09-10 d1wgya_ Ras-binding domain, RBD
0038854 2 2005-09-08 d1i35a_ Ras-binding domain, RBD
0046062 206 2008-09-10 d1c1yb_ Ras-binding domain, RBD
0050740 232 2008-09-10 d1wxma1 Ras-binding domain, RBD
0050532 245 2008-09-10 d1wgra_ Ras-binding domain, RBD
0052076 46 2008-09-10 d2byfa1 Ras-binding domain, RBD
0046493 187 2008-09-10 d1e8ya3 Ras-binding domain, RBD
0047969 142 2008-09-10 d1lfda_ Ras-binding domain, RBD
0043295 37 2005-09-08 d1rlfa_ Ras-binding domain, RBD
0050738 424 2008-09-10 d1wxaa1 Ras-binding domain, RBD
0052269 165 2008-09-10 d2cs4a1 Ras-binding domain, RBD
0046537 142 2008-09-10 d1ef5a_ Ras-binding domain, RBD
0052075 37 2008-09-10 d2byea1 Ras-binding domain, RBD
0046482 203 2008-09-10 d1e7ua3 Ras-binding domain, RBD
0050510 86 2008-09-10 d1wfya_ Ras-binding domain, RBD
0053295 142 2008-09-10 d2rgfa_ Ras-binding domain, RBD
0047488 61 2008-09-10 d1j0ga_ BM-002-like
0047942 61 2008-09-10 d1l7ya_ BM-002-like
0050757 239 2008-09-10 d1wz3a1 APG12-like
0053634 199 2010-05-31 d1wspa1 DIX domain