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2Fe-2S ferredoxin-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 37 SUPERFAMILY models representing the 2Fe-2S ferredoxin-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036703 994 2005-09-08 d1e0za_ 2Fe-2S ferredoxin-related
0039204 967 2005-09-08 d1iuea_ 2Fe-2S ferredoxin-related
0042285 1043 2005-09-08 d1pfda_ 2Fe-2S ferredoxin-related
0046849 2327 2008-09-10 d1frda_ 2Fe-2S ferredoxin-related
0035261 330 2005-09-08 d1ayfa_ 2Fe-2S ferredoxin-related
0037830 1207 2005-09-08 d1fxia_ 2Fe-2S ferredoxin-related
0040391 709 2005-09-08 d1l5pa_ 2Fe-2S ferredoxin-related
0045911 1283 2008-09-10 d1b9ra_ 2Fe-2S ferredoxin-related
0036522 888 2005-09-08 d1doia_ 2Fe-2S ferredoxin-related
0038906 872 2005-09-08 d1i7ha_ 2Fe-2S ferredoxin-related
0035241 1226 2005-09-08 d1awda_ 2Fe-2S ferredoxin-related
0037749 1340 2005-09-08 d1frra_ 2Fe-2S ferredoxin-related
0045591 1043 2005-09-08 d4fxca_ 2Fe-2S ferredoxin-related
0051017 1748 2008-09-10 d1xlqa1 2Fe-2S ferredoxin-related
0036856 644 2005-09-08 d1e9ma_ 2Fe-2S ferredoxin-related
0048556 3733 2008-09-10 d1offa_ 2Fe-2S ferredoxin-related
0038026 960 2005-09-08 d1gaqb_ 2Fe-2S ferredoxin-related
0046241 2178 2008-09-10 d1czpa_ 2Fe-2S ferredoxin-related
0052178 2316 2008-09-10 d2cjoa_ 2Fe-2S ferredoxin-related
0034918 923 2005-09-08 d1a70a_ 2Fe-2S ferredoxin-related
0050692 1782 2008-09-10 d1wria_ 2Fe-2S ferredoxin-related
0052035 1453 2008-09-10 d2bs2b2 2Fe-2S ferredoxin domains from multidomain proteins
0037561 787 2005-09-08 d1ffva2 2Fe-2S ferredoxin domains from multidomain proteins
0039725 1084 2005-09-08 d1jroa2 2Fe-2S ferredoxin domains from multidomain proteins
0044864 1309 2005-09-08 d1vlba2 2Fe-2S ferredoxin domains from multidomain proteins
0049210 1458 2008-09-10 d1rm6c2 2Fe-2S ferredoxin domains from multidomain proteins
0041344 576 2005-09-08 d1nekb2 2Fe-2S ferredoxin domains from multidomain proteins
0046762 94 2008-09-10 d1feha2 2Fe-2S ferredoxin domains from multidomain proteins
0052773 1410 2008-09-10 d2fug33 2Fe-2S ferredoxin domains from multidomain proteins
0040223 872 2005-09-08 d1krha3 2Fe-2S ferredoxin domains from multidomain proteins
0039693 932 2005-09-08 d1jq4a_ 2Fe-2S ferredoxin domains from multidomain proteins
0043858 1126 2005-09-08 d1t3qa2 2Fe-2S ferredoxin domains from multidomain proteins
0036415 1010 2005-09-08 d1dgja2 2Fe-2S ferredoxin domains from multidomain proteins
0041225 561 2005-09-08 d1n62a2 2Fe-2S ferredoxin domains from multidomain proteins
0037699 633 2005-09-08 d1fo4a2 2Fe-2S ferredoxin domains from multidomain proteins
0040052 536 2005-09-08 d1kf6b2 2Fe-2S ferredoxin domains from multidomain proteins
0045410 1382 2005-09-08 d2piaa3 2Fe-2S ferredoxin domains from multidomain proteins