SUPERFAMILY 1.75 HMM library and genome assignments server

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Staphylokinase/streptokinase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 5 SUPERFAMILY models representing the Staphylokinase/streptokinase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047934 40 2008-09-10 d1l4zb_ Staphylokinase/streptokinase
0035623 7 2005-09-08 d1bmlc3 Staphylokinase/streptokinase
0045982 40 2008-09-10 d1bmlc1 Staphylokinase/streptokinase
0049019 149 2008-09-10 d1qqra_ Staphylokinase/streptokinase
0043742 9 2005-09-08 d1ssna_ Staphylokinase/streptokinase