SUPERFAMILY 1.75 HMM library and genome assignments server

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FAD-linked reductases, C-terminal domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 30 SUPERFAMILY models representing the FAD-linked reductases, C-terminal domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0038201 207 2005-09-08 d1gpea2 GMC oxidoreductases
0036093 8 2005-09-08 d1coya2 GMC oxidoreductases
0039759 252 2005-09-08 d1ju2a2 GMC oxidoreductases
0047787 96 2008-09-10 d1kdga2 GMC oxidoreductases
0035355 10 2005-09-08 d1b4va2 GMC oxidoreductases
0052601 30 2008-09-10 d2f5va2 GMC oxidoreductases
0035955 245 2005-09-08 d1cf3a2 GMC oxidoreductases
0054880 141 2010-05-31 d3c96a2 PHBH-like
0047713 201 2008-09-10 d1k0ia2 PHBH-like
0054730 80 2010-05-31 d2voua2 PHBH-like
0037711 57 2005-09-08 d1foha4 PHBH-like
0035805 213 2005-09-08 d1c0pa2 D-aminoacid oxidase-like
0035118 168 2005-09-08 d1an9a2 D-aminoacid oxidase-like
0037068 46 2005-09-08 d1el5a2 D-aminoacid oxidase-like
0041376 449 2005-09-08 d1ng4a2 D-aminoacid oxidase-like
0048495 323 2008-09-10 d1o5wa2 L-aminoacid/polyamine oxidase
0054160 362 2010-05-31 d2ivda2 L-aminoacid/polyamine oxidase
0037442 114 2005-09-08 d1f8ra2 L-aminoacid/polyamine oxidase
0042337 86 2005-09-08 d1pj5a3 L-aminoacid/polyamine oxidase
0038190 131 2005-09-08 d1gosa2 L-aminoacid/polyamine oxidase
0043578 92 2005-09-08 d1seza2 L-aminoacid/polyamine oxidase
0053858 677 2010-05-31 d2dw4a3 L-aminoacid/polyamine oxidase
0035331 155 2005-09-08 d1b37a2 L-aminoacid/polyamine oxidase
0043212 113 2005-09-08 d1reoa2 L-aminoacid/polyamine oxidase
0036284 50 2005-09-08 d1d5ta2 GDI-like
0040661 35 2005-09-08 d1ltxr2 GDI-like
0044415 50 2005-09-08 d1ukvg3 GDI-like
0038927 66 2005-09-08 d1i8ta2 UDP-galactopyranose mutase
0053750 354 2010-05-31 d2bi7a2 UDP-galactopyranose mutase
0052927 606 2008-09-10 d2gmha2 Electron transfer flavoprotein-ubiquinone oxidoreductase-like