SUPERFAMILY 1.75 HMM library and genome assignments server

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NTF2-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 67 SUPERFAMILY models representing the NTF2-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0053334 453 2008-09-10 d3stda_ Scytalone dehydratase
0039599 101 2005-09-08 d1jkgb_ NTF2-like
0042608 12 2005-09-08 d1q40a_ NTF2-like
0047611 463 2008-09-10 d1jkga_ NTF2-like
0041822 75 2005-09-08 d1of5a_ NTF2-like
0054612 373 2010-05-31 d2qiya1 NTF2-like
0042033 533 2005-09-08 d1ouna_ NTF2-like
0042609 89 2005-09-08 d1q40b_ NTF2-like
0041823 17 2005-09-08 d1of5b_ NTF2-like
0047080 488 2008-09-10 d1gy7a_ NTF2-like
0053673 478 2010-05-31 d1zo2a1 NTF2-like
0051680 1311 2008-09-10 d2a15a1 Ketosteroid isomerase-like
0042813 304 2005-09-08 d1qjga_ Ketosteroid isomerase-like
0048566 967 2008-09-10 d1oh0a_ Ketosteroid isomerase-like
0046550 404 2008-09-10 d1eg9b_ Ring hydroxylating beta subunit
0049938 538 2008-09-10 d1ulib_ Ring hydroxylating beta subunit
0054947 394 2010-05-31 d3e99a1 Ring hydroxylating beta subunit
0052008 425 2008-09-10 d2bmob1 Ring hydroxylating beta subunit
0050687 482 2008-09-10 d1wqlb1 Ring hydroxylating beta subunit
0054952 415 2010-05-31 d3ebya1 Ring hydroxylating beta subunit
0051880 534 2008-09-10 d2b1xb1 Ring hydroxylating beta subunit
0050285 118 2008-09-10 d1vqqa1 Penicillin binding protein 2a (PBP2A), N-terminal domain
0040851 121 2005-09-08 d1m98a2 Orange carotenoid protein, C-terminal domain
0053904 343 2010-05-31 d2f86b1 Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
0054683 503 2010-05-31 d2ux0a1 Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
0047196 1036 2008-09-10 d1hkxa_ Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
0053752 562 2010-05-31 d2bnga1 Limonene-1,2-epoxide hydrolase-like
0048458 2637 2008-09-10 d1nwwa_ Limonene-1,2-epoxide hydrolase-like
0053947 1045 2010-05-31 d2geya1 SnoaL-like polyketide cyclase
0049417 1478 2008-09-10 d1sjwa_ SnoaL-like polyketide cyclase
0053905 356 2010-05-31 d2f99a1 SnoaL-like polyketide cyclase
0053946 1017 2010-05-31 d2gexa1 SnoaL-like polyketide cyclase
0054951 779 2010-05-31 d3ebta1 SnoaL-like polyketide cyclase
0049321 2488 2008-09-10 d1s5aa_ PhzA/PhzB-like
0054940 303 2010-05-31 d3dmca1 PhzA/PhzB-like
0054953 455 2010-05-31 d3ec9a1 PhzA/PhzB-like
0053662 382 2010-05-31 d1z1sa1 PhzA/PhzB-like
0044127 215 2005-09-08 d1tuha_ Hypothetical protein egc068 from a soil-derived mobile gene cassette
0044078 19 2005-09-08 d1tp6a_ PA1314-like
0052330 267 2008-09-10 d2cw9a1 TIM44-like
0053926 228 2010-05-31 d2fxta1 TIM44-like
0054836 118 2010-05-31 d3blza1 Sbal0622-like
0054643 373 2010-05-31 d2r4ia1 CHU142-like
0054815 255 2010-05-31 d3b7ca1 SO0125-like
0054821 341 2010-05-31 d3bb9a1 SO0125-like
0054901 286 2010-05-31 d3cnxa1 SAV4671-like
0054666 308 2010-05-31 d2rcda1 BxeB1374-like
0054427 225 2010-05-31 d2owpa1 BxeB1374-like
0054943 247 2010-05-31 d3dxoa1 Atu0744-like
0054939 206 2010-05-31 d3dm8a1 Rpa4348-like
0054965 402 2010-05-31 d3en8a1 Rpa4348-like
0054954 4 2010-05-31 d3ecfa1 Ava4193-like
0053984 447 2010-05-31 d2gxfa1 YybH-like
0054145 224 2010-05-31 d2imja1 PFL3262-like
0054966 233 2010-05-31 d3er7a1 Exig0174-like
0053774 813 2010-05-31 d2chca1 Rv3472-like
0054673 2 2010-05-31 d2rgqa1 Rv3472-like
0053747 209 2010-05-31 d2bhma1 VirB8-like
0053770 202 2010-05-31 d2cc3a1 VirB8-like
0054924 711 2010-05-31 d3d9ra1 ECA1476-like
0054962 444 2010-05-31 d3ejva1 BaiE/LinA-like
0054672 801 2010-05-31 d2rfra1 BaiE/LinA-like
0054909 267 2010-05-31 d3cu3a1 BaiE/LinA-like
0054957 540 2010-05-31 d3ef8a1 BaiE/LinA-like
0054816 915 2010-05-31 d3b8la1 BaiE/LinA-like
0054254 425 2010-05-31 d2k54a1 Atu0742-like
0054114 406 2010-05-31 d2i9wa1 SEC-C associated NTF2-like domain