SUPERFAMILY 1.75 HMM library and genome assignments server

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Pili subunits superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 12 SUPERFAMILY models representing the Pili subunits superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045412 778 2005-09-08 d2pila_ Pilin
0042622 26 2005-09-08 d1q5fa_ Pilin
0038669 213 2005-09-08 d1hpwa_ Pilin
0041982 924 2005-09-08 d1oqwa_ Pilin
0041981 17 2005-09-08 d1oqva_ TcpA-like pilin
0049569 430 2008-09-10 d1t92a_ Pseudopilin
0052938 667 2008-09-10 d2gr7a1 YadA C-terminal domain-like
0054671 168 2010-05-31 d2retb1 EpsJ-like
0054888 157 2010-05-31 d3ci0j1 EpsJ-like
0054891 74 2010-05-31 d3ci0k3 GspK pilin-like domain
0054670 134 2010-05-31 d2reta1 GSPII I/J protein-like
0054887 139 2010-05-31 d3ci0i1 GSPII I/J protein-like