SUPERFAMILY 1.75 HMM library and genome assignments server

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Chitinase insertion domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 14 SUPERFAMILY models representing the Chitinase insertion domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036925 261 2005-09-08 d1edqa3 Chitinase insertion domain
0046257 701 2008-09-10 d1d2ka2 Chitinase insertion domain
0040523 581 2005-09-08 d1ljya2 Chitinase insertion domain
0039195 599 2005-09-08 d1itxa2 Chitinase insertion domain
0050413 688 2008-09-10 d1w9pa2 Chitinase insertion domain
0036855 644 2005-09-08 d1e9la2 Chitinase insertion domain
0043998 561 2005-09-08 d1tfva2 Chitinase insertion domain
0040489 607 2005-09-08 d1lg2a2 Chitinase insertion domain
0038609 593 2005-09-08 d1hjxa2 Chitinase insertion domain
0047638 195 2008-09-10 d1jnda2 Chitinase insertion domain
0036706 353 2005-09-08 d1e15a3 Chitinase insertion domain
0042056 597 2005-09-08 d1owqa2 Chitinase insertion domain
0040069 359 2005-09-08 d1kfwa2 Chitinase insertion domain
0051087 662 2008-09-10 d1xrva2 Chitinase insertion domain