SUPERFAMILY 1.75 HMM library and genome assignments server

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Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 43 SUPERFAMILY models representing the Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0048964 5212 2008-09-10 d1qipa_ Glyoxalase I (lactoylglutathione lyase)
0052095 5348 2008-09-10 d2c21a1 Glyoxalase I (lactoylglutathione lyase)
0046737 5269 2008-09-10 d1f9za_ Glyoxalase I (lactoylglutathione lyase)
0049036 5800 2008-09-10 d1qtoa_ Antibiotic resistance proteins
0046043 6051 2008-09-10 d1byla_ Antibiotic resistance proteins
0047830 6175 2008-09-10 d1klla_ Antibiotic resistance proteins
0048412 6465 2008-09-10 d1npba_ Antibiotic resistance proteins
0051065 5186 2008-09-10 d1xqaa_ Antibiotic resistance proteins
0048015 1484 2008-09-10 d1lqpa_ Antibiotic resistance proteins
0053079 1264 2008-09-10 d2i7ra1 Antibiotic resistance proteins
0046521 1271 2008-09-10 d1ecsa_ Antibiotic resistance proteins
0049133 1171 2008-09-10 d1r9ca_ Antibiotic resistance proteins
0054513 2778 2010-05-31 d2pjsa1 Antibiotic resistance proteins
0046682 5255 2008-09-10 d1f1ua1 Extradiol dioxygenases
0047984 5676 2008-09-10 d1lkda1 Extradiol dioxygenases
0049535 2162 2008-09-10 d1t47a2 Extradiol dioxygenases
0049443 3840 2008-09-10 d1sqia1 Extradiol dioxygenases
0046684 1612 2008-09-10 d1f1xa1 Extradiol dioxygenases
0049434 1873 2008-09-10 d1sp8a1 Extradiol dioxygenases
0047894 4744 2008-09-10 d1kw3b2 Extradiol dioxygenases
0049534 962 2008-09-10 d1t47a1 Extradiol dioxygenases
0048209 5109 2008-09-10 d1mpya2 Extradiol dioxygenases
0049436 2256 2008-09-10 d1sp9a_ Extradiol dioxygenases
0036022 478 2005-09-08 d1cjxa2 Extradiol dioxygenases
0046683 4925 2008-09-10 d1f1ua2 Extradiol dioxygenases
0047985 3400 2008-09-10 d1lkda2 Extradiol dioxygenases
0046159 462 2008-09-10 d1cjxa1 Extradiol dioxygenases
0047893 4702 2008-09-10 d1kw3b1 Extradiol dioxygenases
0048855 5034 2008-09-10 d1q0oa2 Extradiol dioxygenases
0049444 1985 2008-09-10 d1sqia2 Extradiol dioxygenases
0048208 5185 2008-09-10 d1mpya1 Extradiol dioxygenases
0049435 2000 2008-09-10 d1sp8a2 Extradiol dioxygenases
0047558 6164 2008-09-10 d1jc4a_ Methylmalonyl-CoA epimerase
0039909 25 2005-09-08 d1k4na_ Hypothetical protein YecM (EC4020)
0043737 526 2005-09-08 d1ss4a_ Hypothetical protein BC1747
0044219 278 2005-09-08 d1u7ia_ 3-demethylubiquinone-9 3-methyltransferase
0049803 2649 2008-09-10 d1u6la_ 3-demethylubiquinone-9 3-methyltransferase
0049683 1875 2008-09-10 d1tsja_ 3-demethylubiquinone-9 3-methyltransferase
0049800 491 2008-09-10 d1u69a_ 3-demethylubiquinone-9 3-methyltransferase
0049725 5196 2008-09-10 d1twua_ Hypothetical protein YycE
0051145 4627 2008-09-10 d1xy7a_ Hypothetical protein At5g48480
0051635 1161 2008-09-10 d1zswa2 BC1024-like
0051634 6103 2008-09-10 d1zswa1 BC1024-like