SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

dsRNA-binding domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 24 SUPERFAMILY models representing the dsRNA-binding domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0042985 669 2005-09-08 d1qu6a1 Double-stranded RNA-binding domain (dsRBD)
0050561 1825 2008-09-10 d1whqa_ Double-stranded RNA-binding domain (dsRBD)
0052472 2317 2008-09-10 d2dmya1 Double-stranded RNA-binding domain (dsRBD)
0049542 462 2008-09-10 d1t4na_ Double-stranded RNA-binding domain (dsRBD)
0051935 2731 2008-09-10 d2b7va1 Double-stranded RNA-binding domain (dsRBD)
0036436 633 2005-09-08 d1di2a_ Double-stranded RNA-binding domain (dsRBD)
0043193 686 2005-09-08 d1rc7a2 Double-stranded RNA-binding domain (dsRBD)
0050800 2192 2008-09-10 d1x48a1 Double-stranded RNA-binding domain (dsRBD)
0050560 828 2008-09-10 d1whna_ Double-stranded RNA-binding domain (dsRBD)
0052443 2533 2008-09-10 d2dixa1 Double-stranded RNA-binding domain (dsRBD)
0049541 406 2008-09-10 d1t4lb_ Double-stranded RNA-binding domain (dsRBD)
0051934 2597 2008-09-10 d2b7ta1 Double-stranded RNA-binding domain (dsRBD)
0042986 452 2005-09-08 d1qu6a2 Double-stranded RNA-binding domain (dsRBD)
0050799 2395 2008-09-10 d1x47a1 Double-stranded RNA-binding domain (dsRBD)
0041656 699 2005-09-08 d1o0wa2 Double-stranded RNA-binding domain (dsRBD)
0049914 42 2008-09-10 d1uila_ Double-stranded RNA-binding domain (dsRBD)
0052224 2812 2008-09-10 d2cpna1 Double-stranded RNA-binding domain (dsRBD)
0037064 579 2005-09-08 d1ekza_ Double-stranded RNA-binding domain (dsRBD)
0044374 655 2005-09-08 d1uhza_ Double-stranded RNA-binding domain (dsRBD)
0050801 2539 2008-09-10 d1x49a1 Double-stranded RNA-binding domain (dsRBD)
0042361 351 2005-09-08 d1pkpa2 Ribosomal S5 protein, N-terminal domain
0037618 347 2005-09-08 d1fjge2 Ribosomal S5 protein, N-terminal domain
0054588 1065 2010-05-31 d2qale2 Ribosomal S5 protein, N-terminal domain
0040155 51 2005-09-08 d1kn0a_ The homologous-pairing domain of Rad52 recombinase