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Eukaryotic type KH-domain (KH-domain type I) superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 29 SUPERFAMILY models representing the Eukaryotic type KH-domain (KH-domain type I) superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0049699 3415 2008-09-10 d1tuaa1 Eukaryotic type KH-domain (KH-domain type I)
0052225 2522 2008-09-10 d2cpqa1 Eukaryotic type KH-domain (KH-domain type I)
0053736 2248 2010-05-31 d2ba0a3 Eukaryotic type KH-domain (KH-domain type I)
0047512 6234 2008-09-10 d1j4wa1 Eukaryotic type KH-domain (KH-domain type I)
0050815 6620 2008-09-10 d1x4na1 Eukaryotic type KH-domain (KH-domain type I)
0052299 4531 2008-09-10 d2ctla1 Eukaryotic type KH-domain (KH-domain type I)
0054755 1205 2010-05-31 d2z0sa2 Eukaryotic type KH-domain (KH-domain type I)
0039845 1089 2005-09-08 d1k1ga_ Eukaryotic type KH-domain (KH-domain type I)
0050461 6058 2008-09-10 d1we8a_ Eukaryotic type KH-domain (KH-domain type I)
0052295 3873 2008-09-10 d2ctfa1 Eukaryotic type KH-domain (KH-domain type I)
0054214 866 2010-05-31 d2je6i3 Eukaryotic type KH-domain (KH-domain type I)
0047806 6246 2008-09-10 d1khma_ Eukaryotic type KH-domain (KH-domain type I)
0051994 2105 2008-09-10 d2bl5a1 Eukaryotic type KH-domain (KH-domain type I)
0052721 2851 2008-09-10 d2fmra_ Eukaryotic type KH-domain (KH-domain type I)
0046515 5938 2008-09-10 d1ec6a_ Eukaryotic type KH-domain (KH-domain type I)
0050814 6550 2008-09-10 d1x4ma1 Eukaryotic type KH-domain (KH-domain type I)
0052298 1650 2008-09-10 d2ctka1 Eukaryotic type KH-domain (KH-domain type I)
0054281 130 2010-05-31 d2nn6h3 Eukaryotic type KH-domain (KH-domain type I)
0036586 1717 2005-09-08 d1dt4a_ Eukaryotic type KH-domain (KH-domain type I)
0050196 5106 2008-09-10 d1viga_ Eukaryotic type KH-domain (KH-domain type I)
0052294 5451 2008-09-10 d2ctea1 Eukaryotic type KH-domain (KH-domain type I)
0054206 172 2010-05-31 d2ja9a2 Eukaryotic type KH-domain (KH-domain type I)
0047513 6190 2008-09-10 d1j4wa2 Eukaryotic type KH-domain (KH-domain type I)
0051852 2539 2008-09-10 d2axya1 Eukaryotic type KH-domain (KH-domain type I)
0052300 4285 2008-09-10 d2ctma1 Eukaryotic type KH-domain (KH-domain type I)
0044119 751 2005-09-08 d1tuaa2 Eukaryotic type KH-domain (KH-domain type I)
0050725 5800 2008-09-10 d1wvna1 Eukaryotic type KH-domain (KH-domain type I)
0052297 1978 2008-09-10 d2ctja1 Eukaryotic type KH-domain (KH-domain type I)
0054278 169 2010-05-31 d2nn6g3 Eukaryotic type KH-domain (KH-domain type I)