SUPERFAMILY 1.75 HMM library and genome assignments server

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GlnB-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 17 SUPERFAMILY models representing the GlnB-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0038760 333 2005-09-08 d1hwua_ Prokaryotic signal transducing protein
0050169 1162 2008-09-10 d1vfja_ Prokaryotic signal transducing protein
0049066 607 2008-09-10 d1qy7a_ Prokaryotic signal transducing protein
0053273 615 2008-09-10 d2piia_ Prokaryotic signal transducing protein
0049936 1115 2008-09-10 d1ul3a_ Prokaryotic signal transducing protein
0047018 1133 2008-09-10 d1gnka_ Prokaryotic signal transducing protein
0052354 637 2008-09-10 d2cz4a1 Prokaryotic signal transducing protein
0048636 483 2008-09-10 d1osca_ Divalent ion tolerance proteins CutA (CutA1)
0048313 482 2008-09-10 d1naqa_ Divalent ion tolerance proteins CutA (CutA1)
0048679 477 2008-09-10 d1p1la_ Divalent ion tolerance proteins CutA (CutA1)
0048471 476 2008-09-10 d1nzaa_ Divalent ion tolerance proteins CutA (CutA1)
0047861 471 2008-09-10 d1kr4a_ Divalent ion tolerance proteins CutA (CutA1)
0049929 465 2008-09-10 d1ukua_ Divalent ion tolerance proteins CutA (CutA1)
0048360 373 2008-09-10 d1nh8a2 ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain
0047113 375 2008-09-10 d1h3da2 ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain
0048489 233 2008-09-10 d1o51a_ DUF190/COG1993
0054032 89 2010-05-31 d2hfva1 RPA1041-like