SUPERFAMILY 1.75 HMM library and genome assignments server

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RNA-binding domain, RBD superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 98 SUPERFAMILY models representing the RNA-binding domain, RBD superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036165 7103 2005-09-08 d1cvja2 Canonical RBD
0045747 17367 2008-09-10 d1a9nb_ Canonical RBD
0046876 23128 2008-09-10 d1fxla1 Canonical RBD
0048680 24627 2008-09-10 d1p1ta_ Canonical RBD
0049801 12407 2008-09-10 d1u6fa1 Canonical RBD
0050480 17506 2008-09-10 d1wf1a_ Canonical RBD
0050568 6189 2008-09-10 d1whya_ Canonical RBD
0050806 20195 2008-09-10 d1x4ea1 Canonical RBD
0051748 11047 2008-09-10 d2ad9a1 Canonical RBD
0052229 19242 2008-09-10 d2cpxa1 Canonical RBD
0052238 23228 2008-09-10 d2cqba1 Canonical RBD
0052441 2125 2008-09-10 d2disa1 Canonical RBD
0046785 18304 2008-09-10 d1fhta_ Canonical RBD
0049492 23317 2008-09-10 d1sxla_ Canonical RBD
0050477 497 2008-09-10 d1weya_ Canonical RBD
0050565 2131 2008-09-10 d1whva_ Canonical RBD
0050803 20377 2008-09-10 d1x4ba1 Canonical RBD
0050837 24421 2008-09-10 d1x5sa1 Canonical RBD
0052221 21961 2008-09-10 d2cpha1 Canonical RBD
0052234 3705 2008-09-10 d2cq2a1 Canonical RBD
0052245 21319 2008-09-10 d2cqia1 Canonical RBD
0052899 6787 2008-09-10 d2ghpa3 Canonical RBD
0041653 2687 2005-09-08 d1o0pa_ Canonical RBD
0046220 8982 2008-09-10 d1cvja1 Canonical RBD
0047172 9370 2008-09-10 d1hd1a_ Canonical RBD
0048984 10744 2008-09-10 d1qm9a1 Canonical RBD
0049888 2774 2008-09-10 d1ufwa_ Canonical RBD
0050512 1346 2008-09-10 d1wg1a_ Canonical RBD
0050577 7971 2008-09-10 d1wi8a_ Canonical RBD
0050808 9262 2008-09-10 d1x4ga1 Canonical RBD
0052217 19397 2008-09-10 d2cpda1 Canonical RBD
0052231 20827 2008-09-10 d2cpza1 Canonical RBD
0052240 10298 2008-09-10 d2cqda1 Canonical RBD
0052622 6710 2008-09-10 d2f9da1 Canonical RBD
0045479 4006 2005-09-08 d2u1aa_ Canonical RBD
0046795 19486 2008-09-10 d1fjca_ Canonical RBD
0048400 20605 2008-09-10 d1no8a_ Canonical RBD
0049775 2666 2008-09-10 d1u2fa_ Canonical RBD
0050479 7856 2008-09-10 d1wf0a_ Canonical RBD
0050567 12059 2008-09-10 d1whxa_ Canonical RBD
0050805 2972 2008-09-10 d1x4da1 Canonical RBD
0050839 21249 2008-09-10 d1x5ua1 Canonical RBD
0052223 22332 2008-09-10 d2cpja1 Canonical RBD
0052236 11419 2008-09-10 d2cq4a1 Canonical RBD
0052429 2944 2008-09-10 d2dgxa1 Canonical RBD
0053726 9143 2010-05-31 d2b0ga1 Canonical RBD
0042860 3767 2005-09-08 d1qm9a2 Canonical RBD
0046287 22141 2008-09-10 d1d9aa_ Canonical RBD
0047422 21196 2008-09-10 d1iqta_ Canonical RBD
0049416 8193 2008-09-10 d1sjra_ Canonical RBD
0050476 4003 2008-09-10 d1wexa_ Canonical RBD
0050515 10043 2008-09-10 d1wg5a_ Canonical RBD
0050802 6165 2008-09-10 d1x4aa1 Canonical RBD
0050834 19350 2008-09-10 d1x5oa1 Canonical RBD
0052219 7690 2008-09-10 d2cpfa1 Canonical RBD
0052233 6482 2008-09-10 d2cq1a1 Canonical RBD
0052244 17272 2008-09-10 d2cqha1 Canonical RBD
0052898 8155 2008-09-10 d2ghpa2 Canonical RBD
0037834 6111 2005-09-08 d1fxla2 Canonical RBD
0045893 22339 2008-09-10 d1b7fa1 Canonical RBD
0047108 8078 2008-09-10 d1h2tz_ Canonical RBD
0048682 23232 2008-09-10 d1p27b_ Canonical RBD
0049843 20911 2008-09-10 d1uawa_ Canonical RBD
0050481 18519 2008-09-10 d1wf2a_ Canonical RBD
0050576 3918 2008-09-10 d1wi6a1 Canonical RBD
0050807 5139 2008-09-10 d1x4fa1 Canonical RBD
0052082 17288 2008-09-10 d2bz2a1 Canonical RBD
0052230 3531 2008-09-10 d2cpya1 Canonical RBD
0052239 23316 2008-09-10 d2cqca1 Canonical RBD
0052442 2053 2008-09-10 d2dita1 Canonical RBD
0054250 13045 2010-05-31 d2k3ka1 Canonical RBD
0045373 6482 2005-09-08 d2msta_ Canonical RBD
0046794 15933 2008-09-10 d1fj7a_ Canonical RBD
0049769 6471 2008-09-10 d1u1qa_ Canonical RBD
0050478 7141 2008-09-10 d1weza_ Canonical RBD
0050566 22665 2008-09-10 d1whwa_ Canonical RBD
0050804 5165 2008-09-10 d1x4ca1 Canonical RBD
0050838 22054 2008-09-10 d1x5ta1 Canonical RBD
0052222 10262 2008-09-10 d2cpia1 Canonical RBD
0052235 8579 2008-09-10 d2cq3a1 Canonical RBD
0052248 10750 2008-09-10 d2cqpa1 Canonical RBD
0053313 20036 2008-09-10 d2u2fa_ Canonical RBD
0042061 975 2005-09-08 d1owxa_ Canonical RBD
0046286 22877 2008-09-10 d1d8za_ Canonical RBD
0047197 12061 2008-09-10 d1hl6a_ Canonical RBD
0049334 9134 2008-09-10 d1s79a_ Canonical RBD
0050466 10557 2008-09-10 d1wela1 Canonical RBD
0050514 9783 2008-09-10 d1wg4a_ Canonical RBD
0050727 841 2008-09-10 d1wwha1 Canonical RBD
0050809 18571 2008-09-10 d1x4ha1 Canonical RBD
0052218 5346 2008-09-10 d2cpea1 Canonical RBD
0052232 22737 2008-09-10 d2cq0a1 Canonical RBD
0052243 20676 2008-09-10 d2cqga1 Canonical RBD
0052897 5056 2008-09-10 d2ghpa1 Canonical RBD
0047845 121 2008-09-10 d1koha2 Non-canonical RBD domain
0047631 8869 2008-09-10 d1jmta_ Splicing factor U2AF subunits
0044542 194 2005-09-08 d1uw4a_ Smg-4/UPF3
0053862 72 2010-05-31 d2e29a1 GUCT domain