SUPERFAMILY 1.75 HMM library and genome assignments server

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GHMP Kinase, C-terminal domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 11 SUPERFAMILY models representing the GHMP Kinase, C-terminal domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0037811 662 2005-09-08 d1fwka2 Homoserine kinase
0037596 302 2005-09-08 d1fi4a2 Mevalonate 5-diphosphate decarboxylase
0047892 746 2008-09-10 d1kvka2 Mevalonate kinase
0047824 1119 2008-09-10 d1kkha2 Mevalonate kinase
0047747 311 2008-09-10 d1k47a2 Phosphomevalonate kinase (PMK)
0044306 198 2005-09-08 d1ueka2 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
0041877 146 2005-09-08 d1oj4a2 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
0048150 5 2008-09-10 d1mg7a2 Early switch protein XOL-1
0049315 1067 2008-09-10 d1s4ea2 Galactokinase
0042330 311 2005-09-08 d1piea2 Galactokinase
0050715 974 2008-09-10 d1wuua2 Galactokinase