SUPERFAMILY 1.75 HMM library and genome assignments server

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Nucleotide cyclase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 6 SUPERFAMILY models representing the Nucleotide cyclase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045850 2442 2008-09-10 d1azsb_ Adenylyl and guanylyl cyclase catalytic domain
0046871 2123 2008-09-10 d1fx4a_ Adenylyl and guanylyl cyclase catalytic domain
0045849 2740 2008-09-10 d1azsa_ Adenylyl and guanylyl cyclase catalytic domain
0050428 2863 2008-09-10 d1wc3a_ Adenylyl and guanylyl cyclase catalytic domain
0046870 2152 2008-09-10 d1fx2a_ Adenylyl and guanylyl cyclase catalytic domain
0050343 11588 2008-09-10 d1w25a3 GGDEF domain