SUPERFAMILY 1.75 HMM library and genome assignments server

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Nitrite/Sulfite reductase N-terminal domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 10 SUPERFAMILY models representing the Nitrite/Sulfite reductase N-terminal domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0053670 234 2010-05-31 d1zj8a2 Duplicated SiR/NiR-like domains 1 and 3
0045800 1963 2008-09-10 d1aopa1 Duplicated SiR/NiR-like domains 1 and 3
0053700 358 2010-05-31 d2akja2 Duplicated SiR/NiR-like domains 1 and 3
0053669 1051 2010-05-31 d1zj8a1 Duplicated SiR/NiR-like domains 1 and 3
0053699 2321 2010-05-31 d2akja1 Duplicated SiR/NiR-like domains 1 and 3
0045801 1024 2008-09-10 d1aopa2 Duplicated SiR/NiR-like domains 1 and 3
0054696 1391 2010-05-31 d2v4ja2 DsrA/DsrB N-terminal-domain-like
0054872 1397 2010-05-31 d3c7ba2 DsrA/DsrB N-terminal-domain-like
0054699 891 2010-05-31 d2v4jb2 DsrA/DsrB N-terminal-domain-like
0054875 1873 2010-05-31 d3c7bb2 DsrA/DsrB N-terminal-domain-like