SUPERFAMILY 1.75 HMM library and genome assignments server

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CYTH-like phosphatases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 5 SUPERFAMILY models representing the CYTH-like phosphatases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036307 29 2005-09-08 d1d8ia_ mRNA triphosphatase CET1
0052645 208 2008-09-10 d2fbla1 CYTH domain
0051744 382 2008-09-10 d2acaa1 CYTH domain
0054223 248 2010-05-31 d2jmua1 CYTH domain
0051291 264 2008-09-10 d1yema_ CYTH domain