SUPERFAMILY 1.75 HMM library and genome assignments server

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RL5-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 9 SUPERFAMILY models representing the RL5-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0037532 309 2005-09-08 d1ffkd_ Ribosomal protein L5
0054775 1009 2010-05-31 d2zjrd1 Ribosomal protein L5
0040968 321 2005-09-08 d1mjia_ Ribosomal protein L5
0039125 321 2005-09-08 d1iq4a_ Ribosomal protein L5
0053995 1007 2010-05-31 d2gycd1 Ribosomal protein L5
0054304 91 2010-05-31 d2nwua1 SSO1042-like
0054561 92 2010-05-31 d2pzza1 SSO1042-like
0054294 70 2010-05-31 d2nrqa1 SSO1042-like
0054371 124 2010-05-31 d2ogka1 SSO1042-like