SUPERFAMILY 1.75 HMM library and genome assignments server

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YjgF-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 18 SUPERFAMILY models representing the YjgF-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047562 2744 2008-09-10 d1jd1a_ YjgF/L-PSP
0051080 2811 2008-09-10 d1xrga_ YjgF/L-PSP
0042282 609 2005-09-08 d1pf5a_ YjgF/L-PSP
0049042 2821 2008-09-10 d1qu9a_ YjgF/L-PSP
0054414 592 2010-05-31 d2otma1 YjgF/L-PSP
0048608 2742 2008-09-10 d1onia_ YjgF/L-PSP
0052325 2817 2008-09-10 d2cvla1 YjgF/L-PSP
0047528 2803 2008-09-10 d1j7ha_ YjgF/L-PSP
0048930 2820 2008-09-10 d1qd9a_ YjgF/L-PSP
0052530 1140 2008-09-10 d2ewca1 YjgF/L-PSP
0048417 2740 2008-09-10 d1nq3a_ YjgF/L-PSP
0051889 2810 2008-09-10 d2b33a1 YjgF/L-PSP
0050777 2792 2008-09-10 d1x25a1 YjgF/L-PSP
0048914 2752 2008-09-10 d1qaha_ YjgF/L-PSP
0052332 2778 2008-09-10 d2cwja1 YjgF/L-PSP
0050969 143 2008-09-10 d1xhoa_ Chorismate mutase
0036333 40 2005-09-08 d1dbfa_ Chorismate mutase
0044338 40 2005-09-08 d1ufya_ Chorismate mutase