SUPERFAMILY 1.75 HMM library and genome assignments server

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L30e-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 18 SUPERFAMILY models representing the L30e-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046480 607 2008-09-10 d1e7ka_ L30e/L7ae ribosomal proteins
0042511 397 2005-09-08 d1pxwa_ L30e/L7ae ribosomal proteins
0053703 1090 2010-05-31 d2alea1 L30e/L7ae ribosomal proteins
0049508 653 2008-09-10 d1t0kb_ L30e/L7ae ribosomal proteins
0043564 440 2005-09-08 d1sdsa_ L30e/L7ae ribosomal proteins
0053907 1258 2010-05-31 d2fc3a1 L30e/L7ae ribosomal proteins
0053697 1143 2010-05-31 d2aifa1 L30e/L7ae ribosomal proteins
0037533 750 2005-09-08 d1ffke_ L30e/L7ae ribosomal proteins
0049200 606 2008-09-10 d1rlga_ L30e/L7ae ribosomal proteins
0043511 750 2005-09-08 d1s72f_ L30e/L7ae ribosomal proteins
0053753 599 2010-05-31 d2bo1a1 L30e/L7ae ribosomal proteins
0038463 545 2005-09-08 d1h7ma_ L30e/L7ae ribosomal proteins
0036589 145 2005-09-08 d1dt9a2 ERF1/Dom34 C-terminal domain-like
0054611 394 2010-05-31 d2qi2a3 ERF1/Dom34 C-terminal domain-like
0054717 292 2010-05-31 d2vgna3 ERF1/Dom34 C-terminal domain-like
0053639 333 2010-05-31 d1x52a1 ERF1/Dom34 C-terminal domain-like
0038339 225 2005-09-08 d1gz0f2 RNA 2'-O ribose methyltransferase substrate binding domain
0039117 186 2005-09-08 d1ipaa2 RNA 2'-O ribose methyltransferase substrate binding domain