SUPERFAMILY 1.75 HMM library and genome assignments server

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FMN-dependent nitroreductase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 12 SUPERFAMILY models representing the FMN-dependent nitroreductase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035601 610 2005-09-08 d1bkja_ NADH oxidase/flavin reductase
0051556 2616 2008-09-10 d1zcha1 NADH oxidase/flavin reductase
0044736 566 2005-09-08 d1vfra_ NADH oxidase/flavin reductase
0037401 492 2005-09-08 d1f5va_ NADH oxidase/flavin reductase
0052748 2559 2008-09-10 d2frea1 NADH oxidase/flavin reductase
0051432 1933 2008-09-10 d1ywqa1 NADH oxidase/flavin reductase
0041494 750 2005-09-08 d1noxa_ NADH oxidase/flavin reductase
0036576 750 2005-09-08 d1ds7a_ NADH oxidase/flavin reductase
0051924 3019 2008-09-10 d2b67a1 NADH oxidase/flavin reductase
0041335 750 2005-09-08 d1neca_ NADH oxidase/flavin reductase
0053102 167 2008-09-10 d2ifaa1 NADH oxidase/flavin reductase
0044848 146 2005-09-08 d1vkwa_ Putative nitroreductase TM1586