SUPERFAMILY 1.75 HMM library and genome assignments server

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SH2 domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 38 SUPERFAMILY models representing the SH2 domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0034802 1188 2005-09-08 d1a09a_ SH2 domain
0037590 1130 2005-09-08 d1fhsa_ SH2 domain
0041534 1072 2005-09-08 d1nrva_ SH2 domain
0045735 1464 2008-09-10 d1a81a2 SH2 domain
0049229 3204 2008-09-10 d1rpya_ SH2 domain
0035602 1183 2005-09-08 d1bkla_ SH2 domain
0040529 1132 2005-09-08 d1lkka_ SH2 domain
0045209 32 2005-09-08 d2cbla3 SH2 domain
0048234 3497 2008-09-10 d1mw4a_ SH2 domain
0054170 1957 2010-05-31 d2izva2 SH2 domain
0035143 1162 2005-09-08 d1aotf_ SH2 domain
0038863 1035 2005-09-08 d1i3za_ SH2 domain
0042706 1110 2005-09-08 d1qcfa2 SH2 domain
0047684 1217 2008-09-10 d1ju5a_ SH2 domain
0052267 3922 2008-09-10 d2cs0a1 SH2 domain
0036271 903 2005-09-08 d1d4ta_ SH2 domain
0040946 1060 2005-09-08 d1mila_ SH2 domain
0045451 923 2005-09-08 d2shpa2 SH2 domain
0049185 3602 2008-09-10 d1rjaa_ SH2 domain
0035526 124 2005-09-08 d1bg1a3 SH2 domain
0039981 1130 2005-09-08 d1k9aa2 SH2 domain
0044534 670 2005-09-08 d1uura3 SH2 domain
0048099 3416 2008-09-10 d1m61a2 SH2 domain
0053769 2448 2010-05-31 d2c9wa2 SH2 domain
0034940 811 2005-09-08 d1a81a1 SH2 domain
0037781 1138 2005-09-08 d1fu6a_ SH2 domain
0042328 1087 2005-09-08 d1pica_ SH2 domain
0045979 3809 2008-09-10 d1blja_ SH2 domain
0050893 1424 2008-09-10 d1xa6a2 SH2 domain
0036143 912 2005-09-08 d1csya_ SH2 domain
0040671 1029 2005-09-08 d1luia_ SH2 domain
0045415 1100 2005-09-08 d2plda_ SH2 domain
0048620 3835 2008-09-10 d1opka2 SH2 domain
0035513 377 2005-09-08 d1bf5a3 SH2 domain
0039796 1069 2005-09-08 d1jwoa_ SH2 domain
0043094 1120 2005-09-08 d1r1qa_ SH2 domain
0048098 1318 2008-09-10 d1m61a1 SH2 domain
0053301 3709 2008-09-10 d2shpa3 SH2 domain