SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

HPr-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 8 SUPERFAMILY models representing the HPr-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0039840 267 2005-09-08 d1k1ca_ HPr-like
0042956 267 2005-09-08 d1qr5a_ HPr-like
0041964 268 2005-09-08 d1opda_ HPr-like
0053228 1250 2008-09-10 d2nzul1 HPr-like
0042460 268 2005-09-08 d1ptfa_ HPr-like
0039990 267 2005-09-08 d1ka5a_ HPr-like
0043697 265 2005-09-08 d1spha_ HPr-like
0042253 269 2005-09-08 d1pcha_ HPr-like