SUPERFAMILY 1.75 HMM library and genome assignments server

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Homing endonucleases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 13 SUPERFAMILY models representing the Homing endonucleases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0041030 309 2005-09-08 d1mowa1 Group I mobile intron endonuclease
0049127 153 2008-09-10 d1r7mb2 Group I mobile intron endonuclease
0035313 92 2005-09-08 d1b24a2 Group I mobile intron endonuclease
0048095 464 2008-09-10 d1m5xa_ Group I mobile intron endonuclease
0049126 59 2008-09-10 d1r7ma1 Group I mobile intron endonuclease
0035312 4 2005-09-08 d1b24a1 Group I mobile intron endonuclease
0042194 347 2005-09-08 d1p8kz1 Group I mobile intron endonuclease
0035652 334 2005-09-08 d1bp7a_ Group I mobile intron endonuclease
0048712 482 2008-09-10 d1p8kz2 Group I mobile intron endonuclease
0036398 112 2005-09-08 d1dfaa3 Intein endonuclease
0036553 259 2005-09-08 d1dq3a4 Intein endonuclease
0036397 21 2005-09-08 d1dfaa2 Intein endonuclease
0036552 6 2005-09-08 d1dq3a3 Intein endonuclease