SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

L9 N-domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 4 SUPERFAMILY models representing the L9 N-domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0053142 890 2008-09-10 d2j01i2 Ribosomal protein L9 N-domain
0053997 977 2010-05-31 d2gycf2 Ribosomal protein L9 N-domain
0053578 975 2010-05-31 d1cqua_ Ribosomal protein L9 N-domain
0042790 105 2005-09-08 d1qhka_ N-terminal domain of RNase HI