SUPERFAMILY 1.75 HMM library and genome assignments server

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Actin depolymerizing proteins superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 25 SUPERFAMILY models representing the Actin depolymerizing proteins superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036220 634 2005-09-08 d1d0na2 Gelsolin-like
0039398 639 2005-09-08 d1j72a2 Gelsolin-like
0041507 627 2005-09-08 d1npha2 Gelsolin-like
0053314 2251 2008-09-10 d2vila_ Gelsolin-like
0036222 681 2005-09-08 d1d0na4 Gelsolin-like
0039551 732 2005-09-08 d1jhwa3 Gelsolin-like
0043781 580 2005-09-08 d1svya_ Gelsolin-like
0036224 569 2005-09-08 d1d0na6 Gelsolin-like
0036221 670 2005-09-08 d1d0na3 Gelsolin-like
0039550 508 2005-09-08 d1jhwa1 Gelsolin-like
0038372 632 2005-09-08 d1h1vg2 Gelsolin-like
0036223 620 2005-09-08 d1d0na5 Gelsolin-like
0040022 541 2005-09-08 d1kcqa_ Gelsolin-like
0049533 2224 2008-09-10 d1t44g_ Gelsolin-like
0044290 128 2005-09-08 d1udma_ Cofilin-like
0035078 255 2005-09-08 d1ak7a_ Cofilin-like
0037429 216 2005-09-08 d1f7sa_ Cofilin-like
0044994 130 2005-09-08 d1wnja_ Cofilin-like
0036074 265 2005-09-08 d1cnua_ Cofilin-like
0038681 249 2005-09-08 d1hqz1_ Cofilin-like
0040776 222 2005-09-08 d1m4ja_ Cofilin-like
0050504 645 2008-09-10 d1wfsa_ Cofilin-like
0044639 227 2005-09-08 d1v6fa_ Cofilin-like
0035967 260 2005-09-08 d1cfya_ Cofilin-like
0042657 223 2005-09-08 d1q8ga_ Cofilin-like