SUPERFAMILY 1.75 HMM library and genome assignments server

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Nudix superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 31 SUPERFAMILY models representing the Nudix superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0052791 3876 2008-09-10 d2fvva1 MutT-like
0044768 1760 2005-09-08 d1vhza_ MutT-like
0048878 4776 2008-09-10 d1q33a_ MutT-like
0051092 5829 2008-09-10 d1xsaa_ MutT-like
0041520 1980 2005-09-08 d1nqza_ MutT-like
0047729 4904 2008-09-10 d1k2ea_ MutT-like
0051867 6209 2008-09-10 d2azwa1 MutT-like
0037875 1341 2005-09-08 d1g0sa_ MutT-like
0046700 4832 2008-09-10 d1f3ya_ MutT-like
0049771 3157 2008-09-10 d1u20a1 MutT-like
0051875 4863 2008-09-10 d2b0va1 MutT-like
0041034 1609 2005-09-08 d1mp2a_ MutT-like
0047428 4899 2008-09-10 d1irya_ MutT-like
0050134 7786 2008-09-10 d1vcda1 MutT-like
0044789 685 2005-09-08 d1viua_ MutT-like
0049418 4220 2008-09-10 d1sjya_ MutT-like
0048821 7693 2008-09-10 d1puna_ MutT-like
0051868 4919 2008-09-10 d2b06a1 MutT-like
0040258 1752 2005-09-08 d1ktga_ MutT-like
0050097 7088 2008-09-10 d1v8ya_ MutT-like
0048869 4963 2008-09-10 d1q27a_ IPP isomerase-like
0052710 2757 2008-09-10 d2fkba1 IPP isomerase-like
0047252 957 2008-09-10 d1hx3a_ IPP isomerase-like
0050821 929 2008-09-10 d1x51a1 MutY C-terminal domain-like
0043363 553 2005-09-08 d1rrqa2 MutY C-terminal domain-like
0050219 4814 2008-09-10 d1vk6a2 NADH pyrophosphatase
0050220 126 2008-09-10 d1vk6a3 NADH pyrophosphatase
0043415 1352 2005-09-08 d1ryaa_ GDP-mannose mannosyl hydrolase NudD
0052634 493 2008-09-10 d2fb1a2 BT0354 N-terminal domain-like
0052719 7105 2008-09-10 d2fmla2 BT0354 N-terminal domain-like
0051716 5835 2008-09-10 d2a6ta2 mRNA decapping enzyme-like