SUPERFAMILY 1.75 HMM library and genome assignments server

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Thymidylate synthase/dCMP hydroxymethylase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 10 SUPERFAMILY models representing the Thymidylate synthase/dCMP hydroxymethylase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0038750 271 2005-09-08 d1hvya_ Thymidylate synthase/dCMP hydroxymethylase
0035358 194 2005-09-08 d1b5ea_ Thymidylate synthase/dCMP hydroxymethylase
0044107 272 2005-09-08 d1tsya_ Thymidylate synthase/dCMP hydroxymethylase
0042943 270 2005-09-08 d1qqqa_ Thymidylate synthase/dCMP hydroxymethylase
0035996 269 2005-09-08 d1ci7a_ Thymidylate synthase/dCMP hydroxymethylase
0044026 271 2005-09-08 d1tisa_ Thymidylate synthase/dCMP hydroxymethylase
0039350 270 2005-09-08 d1j3kc_ Thymidylate synthase/dCMP hydroxymethylase
0035603 269 2005-09-08 d1bkpa_ Thymidylate synthase/dCMP hydroxymethylase
0045478 270 2005-09-08 d2tsra_ Thymidylate synthase/dCMP hydroxymethylase
0043052 270 2005-09-08 d1qzfa2 Thymidylate synthase/dCMP hydroxymethylase