SUPERFAMILY 1.75 HMM library and genome assignments server

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N-acetylmuramoyl-L-alanine amidase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 11 SUPERFAMILY models representing the N-acetylmuramoyl-L-alanine amidase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0043642 204 2005-09-08 d1sk4a_ N-acetylmuramoyl-L-alanine amidase-like
0052587 628 2008-09-10 d2f2lx1 N-acetylmuramoyl-L-alanine amidase-like
0051969 966 2008-09-10 d2bgxa2 N-acetylmuramoyl-L-alanine amidase-like
0049494 597 2008-09-10 d1sxra_ N-acetylmuramoyl-L-alanine amidase-like
0040443 250 2005-09-08 d1lbaa_ N-acetylmuramoyl-L-alanine amidase-like
0052586 125 2008-09-10 d2f2la1 N-acetylmuramoyl-L-alanine amidase-like
0051276 626 2008-09-10 d1ycka1 N-acetylmuramoyl-L-alanine amidase-like
0048569 610 2008-09-10 d1ohta_ N-acetylmuramoyl-L-alanine amidase-like
0039348 232 2005-09-08 d1j3ga_ N-acetylmuramoyl-L-alanine amidase-like
0052137 596 2008-09-10 d2cb3a1 N-acetylmuramoyl-L-alanine amidase-like
0051259 609 2008-09-10 d1yb0a1 N-acetylmuramoyl-L-alanine amidase-like