SUPERFAMILY 1.75 HMM library and genome assignments server

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Pentein superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 15 SUPERFAMILY models representing the Pentein superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0037954 62 2005-09-08 d1g62a_ Ribosome anti-association factor eIF6 (aIF6)
0037953 60 2005-09-08 d1g61a_ Ribosome anti-association factor eIF6 (aIF6)
0047563 606 2008-09-10 d1jdwa_ Amidinotransferase
0035742 107 2005-09-08 d1bwda_ Amidinotransferase
0047136 1009 2008-09-10 d1h70a_ Dimethylarginine dimethylaminohydrolase DDAH
0043530 125 2005-09-08 d1s9ra_ Arginine deiminase
0043408 168 2005-09-08 d1rxxa_ Arginine deiminase
0044954 43 2005-09-08 d1wdaa3 Peptidylarginine deiminase Pad4, catalytic C-terminal domain
0052532 389 2008-09-10 d2ewoa1 Porphyromonas-type peptidylarginine deiminase
0051002 435 2008-09-10 d1xkna_ Porphyromonas-type peptidylarginine deiminase
0054220 479 2010-05-31 d2jera1 Porphyromonas-type peptidylarginine deiminase
0051543 429 2008-09-10 d1zbra1 Porphyromonas-type peptidylarginine deiminase
0050230 283 2008-09-10 d1vkpa_ Porphyromonas-type peptidylarginine deiminase
0053780 513 2010-05-31 d2cmua1 Porphyromonas-type peptidylarginine deiminase
0051350 174 2008-09-10 d1ynfa1 Succinylarginine dihydrolase-like