SUPERFAMILY 1.75 HMM library and genome assignments server

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ADP-ribosylation superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 22 SUPERFAMILY models representing the ADP-ribosylation superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0037894 234 2005-09-08 d1g24a_ ADP-ribosylating toxins
0044021 29 2005-09-08 d1tii.1 ADP-ribosylating toxins
0042433 22 2005-09-08 d1prta_ ADP-ribosylating toxins
0049029 192 2008-09-10 d1qs1a2 ADP-ribosylating toxins
0047383 40 2008-09-10 d1ikpa2 ADP-ribosylating toxins
0037313 4 2005-09-08 d1f0la2 ADP-ribosylating toxins
0049322 110 2008-09-10 d1s5da_ ADP-ribosylating toxins
0040659 32 2005-09-08 d1lts.1 ADP-ribosylating toxins
0048582 122 2008-09-10 d1ojqa_ ADP-ribosylating toxins
0038116 25 2005-09-08 d1giqa1 ADP-ribosylating toxins
0046994 190 2008-09-10 d1giqa2 ADP-ribosylating toxins
0042967 29 2005-09-08 d1qs1a1 ADP-ribosylating toxins
0049098 173 2008-09-10 d1r45a_ ADP-ribosylating toxins
0047531 39 2008-09-10 d1j7na3 ADP-ribosylating toxins
0049927 344 2008-09-10 d1uk0a2 Poly(ADP-ribose) polymerase, C-terminal domain
0038240 167 2005-09-08 d1gs0a2 Poly(ADP-ribose) polymerase, C-terminal domain
0034840 174 2005-09-08 d1a26a2 Poly(ADP-ribose) polymerase, C-terminal domain
0038322 72 2005-09-08 d1gxya_ Ecto-ART
0043470 6 2005-09-08 d1s21a_ AvrPphF ORF2, a type III effector
0050509 142 2008-09-10 d1wfxa_ Tpt1/KptA
0051835 33 2008-09-10 d2auaa1 BC2332-like
0053230 179 2008-09-10 d2o0qa1 CC0527-like